| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082043
Identifier: 99082043
GI number: 99082043
Start: 2313438
End: 2314466
Strand: Direct
Name: 99082043
Synonym: TM1040_2203
Alternate gene names: NA
Gene position: 2313438-2314466 (Clockwise)
Preceding gene: 99082042
Following gene: 99082044
Centisome position: 72.27
GC content: 63.56
Gene sequence:
>1029_bases ATGCCCCTCTTATACCGCCTCACCGCCACCGCCTGCACCGTTGCCTGCACCGTCTTGGCACTTTCGAGCGCCGCCCGCGC GGACGCACTTGCAGAGGCGGTGATCGATCAGCATATCCTGCCGACCTACGCCCAGCTCGCGTCCGAGAGCGCCGAGTTTG CAACCCTCGCCCAGAGCGACTGCGCCCCCACCTCAGAGGCTGTGCGCAATGCCTGGGGAGCGGCCTTTGACGCCTGGGTC GCTGCGAGTCATCTGCGCTTTGGCCCCTCAGAGGTGGACAATCGGGCCTTTGCCATCGCCTTTTGGCCCGACAGCCGCTC CAAGACCCCCAAAGCGCTGCGCAGTCTGTTGACCAACCGCAGCCCGGTGGTGGACACGCCCGAGGATTTTGCCACCGCTT CGGTCGCTGTGCGCGGGTTCTACGCGCTCGAATACCTCTTTTTTGATCCGGCTTACGCGGATCTCGGCGATCCGGACTAT GCCTGCGCATTTGTTCAAGCGGTTGCACGGGACCTTGCGCGAAACAGCGCCGCTATTCTGGATGACTGGGAGCAGGACTA CGCCGATCAATTGCGCACCCCGGCAGCGCGCTACCGCAGCGAGACCGAAGCGCATCAGGAGCTGTTCAAGGCGCTGACCA CCGGGCTTGAGATCCTCGCCGACATGCGGATCGGGCGCCCGCTTGGTACTTTTGATGCGCCAAAGCCGAACCGCGCCGAG GCCCGTCGCTCTGGCCGCTCCCTGCGCCATATCGAGATCCAACTCCAGAGCCTGCGGGAACTGGCCCTGCTCTTGTCGGC CAATGACGGGGCACTGACCGAGCATCTGACCCAGGTGTTTGACAAGGCCGACCGCCACGCAGACCAGCTCTCGGACGATC CAAGCCTTGCGGGCATCACAGATCCGCAAAAGCGCTTTCTGCTGGAGACACTGCAACAGGACGTCTTTGAGATCAAAGAA ATCGCCCTGCGTGATCTCGGCCCCAAACTGGGTGTCGAGGCCGGCTTCAACGCGCTGGATGGCGACTGA
Upstream 100 bases:
>100_bases TCCTCTGGCACGGCGGCGAAGCACAAGCCGCCCGCGACCGGGTGGTGGCCCTGCCCCCTGCCGACCGCGCGGCGCTTATT TCATTCCTGGAGTCCCTTTG
Downstream 100 bases:
>100_bases CCACGTGTCGCATTGCACTGATACAGGAGTTTCAACATGCCCTCTCGACGCGGCTTTCTTGCAGGTCTGTTGGCCAGCAG CGTGACGCCAACCGCCACAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MPLLYRLTATACTVACTVLALSSAARADALAEAVIDQHILPTYAQLASESAEFATLAQSDCAPTSEAVRNAWGAAFDAWV AASHLRFGPSEVDNRAFAIAFWPDSRSKTPKALRSLLTNRSPVVDTPEDFATASVAVRGFYALEYLFFDPAYADLGDPDY ACAFVQAVARDLARNSAAILDDWEQDYADQLRTPAARYRSETEAHQELFKALTTGLEILADMRIGRPLGTFDAPKPNRAE ARRSGRSLRHIEIQLQSLRELALLLSANDGALTEHLTQVFDKADRHADQLSDDPSLAGITDPQKRFLLETLQQDVFEIKE IALRDLGPKLGVEAGFNALDGD
Sequences:
>Translated_342_residues MPLLYRLTATACTVACTVLALSSAARADALAEAVIDQHILPTYAQLASESAEFATLAQSDCAPTSEAVRNAWGAAFDAWV AASHLRFGPSEVDNRAFAIAFWPDSRSKTPKALRSLLTNRSPVVDTPEDFATASVAVRGFYALEYLFFDPAYADLGDPDY ACAFVQAVARDLARNSAAILDDWEQDYADQLRTPAARYRSETEAHQELFKALTTGLEILADMRIGRPLGTFDAPKPNRAE ARRSGRSLRHIEIQLQSLRELALLLSANDGALTEHLTQVFDKADRHADQLSDDPSLAGITDPQKRFLLETLQQDVFEIKE IALRDLGPKLGVEAGFNALDGD >Mature_341_residues PLLYRLTATACTVACTVLALSSAARADALAEAVIDQHILPTYAQLASESAEFATLAQSDCAPTSEAVRNAWGAAFDAWVA ASHLRFGPSEVDNRAFAIAFWPDSRSKTPKALRSLLTNRSPVVDTPEDFATASVAVRGFYALEYLFFDPAYADLGDPDYA CAFVQAVARDLARNSAAILDDWEQDYADQLRTPAARYRSETEAHQELFKALTTGLEILADMRIGRPLGTFDAPKPNRAEA RRSGRSLRHIEIQLQSLRELALLLSANDGALTEHLTQVFDKADRHADQLSDDPSLAGITDPQKRFLLETLQQDVFEIKEI ALRDLGPKLGVEAGFNALDGD
Specific function: Unknown
COG id: COG3489
COG function: function code R; Predicted periplasmic lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37386; Mature: 37255
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLLYRLTATACTVACTVLALSSAARADALAEAVIDQHILPTYAQLASESAEFATLAQSD CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHC CAPTSEAVRNAWGAAFDAWVAASHLRFGPSEVDNRAFAIAFWPDSRSKTPKALRSLLTNR CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEECCCCCCCCHHHHHHHHCCC SPVVDTPEDFATASVAVRGFYALEYLFFDPAYADLGDPDYACAFVQAVARDLARNSAAIL CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHH DDWEQDYADQLRTPAARYRSETEAHQELFKALTTGLEILADMRIGRPLGTFDAPKPNRAE HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH ARRSGRSLRHIEIQLQSLRELALLLSANDGALTEHLTQVFDKADRHADQLSDDPSLAGIT HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC DPQKRFLLETLQQDVFEIKEIALRDLGPKLGVEAGFNALDGD CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC >Mature Secondary Structure PLLYRLTATACTVACTVLALSSAARADALAEAVIDQHILPTYAQLASESAEFATLAQSD CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHC CAPTSEAVRNAWGAAFDAWVAASHLRFGPSEVDNRAFAIAFWPDSRSKTPKALRSLLTNR CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEECCCCCCCCHHHHHHHHCCC SPVVDTPEDFATASVAVRGFYALEYLFFDPAYADLGDPDYACAFVQAVARDLARNSAAIL CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHH DDWEQDYADQLRTPAARYRSETEAHQELFKALTTGLEILADMRIGRPLGTFDAPKPNRAE HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH ARRSGRSLRHIEIQLQSLRELALLLSANDGALTEHLTQVFDKADRHADQLSDDPSLAGIT HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC DPQKRFLLETLQQDVFEIKEIALRDLGPKLGVEAGFNALDGD CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA