| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is bfr [H]
Identifier: 99082041
GI number: 99082041
Start: 2311530
End: 2311898
Strand: Direct
Name: bfr [H]
Synonym: TM1040_2201
Alternate gene names: 99082041
Gene position: 2311530-2311898 (Clockwise)
Preceding gene: 99082040
Following gene: 99082042
Centisome position: 72.21
GC content: 54.74
Gene sequence:
>369_bases ATGGCCAAGAAGAGCCGCGAGGAAAGCATCGAAGAGATGAACCACGCGGACAAGCTGATCGACCGGATCATCTTTCTCGA AGGTCATCCCAACCTGCAGACACTCGACCCGCTGCGCATCGGCCAATCCCCCAAGGAAACATTAGAATGCGATCTGGCCG CCGAACAAGAAGCCCGCGCGCTTTATAAAGAAGCGGCAGAATACTGTAGGACCCATGGTGATTTCGTGTCTGAGGAGCTG TTCAAAGAGCTACTCGCAGACGAGGAAGGCCATATTGATTTCCTGGAGACCCAGCTTGAATTGCACGACCGCGTTGGCGC CGAAAACTACGCGCAGCTCAACGCCTCCAAGATGGACGAAGCCGAGTAA
Upstream 100 bases:
>100_bases AGTCATCGAATATCTCAACAAGGCACTTAGGAGCGAGCTGACTGCTGTCAGCCAGTACTGGCTGCACTACCGGCTCCAGG CGGACTGGGGCCTTGGGCAC
Downstream 100 bases:
>100_bases CTCGGTACCAGTTCTCGGTGCGGCCCTCGCTCTGGTGCTGGCCGCACCGCTTCATGCGACGGACCGCCCTGCCCCCGCGG CGCCTGGTTTGGCAGAGCCG
Product: Ferritin and Dps
Products: NA
Alternate protein names: BFR [H]
Number of amino acids: Translated: 122; Mature: 121
Protein sequence:
>122_residues MAKKSREESIEEMNHADKLIDRIIFLEGHPNLQTLDPLRIGQSPKETLECDLAAEQEARALYKEAAEYCRTHGDFVSEEL FKELLADEEGHIDFLETQLELHDRVGAENYAQLNASKMDEAE
Sequences:
>Translated_122_residues MAKKSREESIEEMNHADKLIDRIIFLEGHPNLQTLDPLRIGQSPKETLECDLAAEQEARALYKEAAEYCRTHGDFVSEEL FKELLADEEGHIDFLETQLELHDRVGAENYAQLNASKMDEAE >Mature_121_residues AKKSREESIEEMNHADKLIDRIIFLEGHPNLQTLDPLRIGQSPKETLECDLAAEQEARALYKEAAEYCRTHGDFVSEELF KELLADEEGHIDFLETQLELHDRVGAENYAQLNASKMDEAE
Specific function: May perform analogous functions in iron detoxification and storage to that of animal ferritins [H]
COG id: COG2193
COG function: function code P; Bacterioferritin (cytochrome b1)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ferritin-like diiron domain [H]
Homologues:
Organism=Escherichia coli, GI1789733, Length=105, Percent_Identity=50.4761904761905, Blast_Score=104, Evalue=2e-24,
Paralogues:
None
Copy number: 1639 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002024 - InterPro: IPR009040 - InterPro: IPR012347 - InterPro: IPR009078 - InterPro: IPR008331 [H]
Pfam domain/function: PF00210 Ferritin [H]
EC number: NA
Molecular weight: Translated: 13976; Mature: 13844
Theoretical pI: Translated: 4.23; Mature: 4.23
Prosite motif: PS50905 FERRITIN_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKKSREESIEEMNHADKLIDRIIFLEGHPNLQTLDPLRIGQSPKETLECDLAAEQEARA CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHCCHHHHHHHH LYKEAAEYCRTHGDFVSEELFKELLADEEGHIDFLETQLELHDRVGAENYAQLNASKMDE HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCHHHCCC AE CC >Mature Secondary Structure AKKSREESIEEMNHADKLIDRIIFLEGHPNLQTLDPLRIGQSPKETLECDLAAEQEARA CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHCCHHHHHHHH LYKEAAEYCRTHGDFVSEELFKELLADEEGHIDFLETQLELHDRVGAENYAQLNASKMDE HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCHHHCCC AE CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8674981; 11752777 [H]