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The map label for this gene is soxB [H]

Identifier: 99081987

GI number: 99081987

Start: 2254116

End: 2255420

Strand: Reverse

Name: soxB [H]

Synonym: TM1040_2147

Alternate gene names: 99081987

Gene position: 2255420-2254116 (Counterclockwise)

Preceding gene: 99081990

Following gene: 99081986

Centisome position: 70.46

GC content: 59.69

Gene sequence:

>1305_bases
GTGCTGCACATCGTCGAGACACCGTTTGAGGAGTGGGCCATGGGGTTTTCGGAAAAGTTTTCCGGCTGGCGCGTTTTGAA
AGAGGGGCTGACCGGCAACAAAGGCTGGACCGCTCATTGGCGCGACCCGGAACCCAAGCGCGAATATGACGTGGTCATCG
TCGGTGGAGGTGGGCACGGGCTGGCTACGGCTTATTACCTCGCCAAGACTCACGGGCTTAGGAATATTGCGGTTCTTGAA
AAGGGCTACCTTGGCGGCGGCAATGTCGGGCGCAACACAACCATCGTGCGCGCCAACTATTATCTGCCCGGCAATTCGGA
GTTTTATTCCCATTCTCTGAAGCTCTGGGAGGGGATGGAGCAGGATCTCAACTACAACGCCATGATGTCCCAGCGCGGCA
TCCTGAATGTGTTTCACAACGACGGTCAGCGCGATGCCGCCGTGCGCCGCGCCAATTCCATCATCAATCAGGGTGACGAT
GCAGAGATCCTCTATCGCGATCAGCTGAAAAAGCTGGTGCCGTTCCTGAACTACGACAACAACCGCTTTCCCATCATGGG
CGCATTGCTGCAGCGCCGCGCGGGGACGGCACGCCATGACGCGGTGGCCTGGGGCTTTGCGCGTGGCGCAGATCAATACG
GTGTCGATCTGATCCAGAATTGCGAAGTAACCGGCATTGATGTCGATGGCGGAAAGGTCACCGGCGTGCAAACAGTGCGC
GGCCCGATTAAGGCCAAGAAGGTTGCATTGGCGGCGGCGGGGCGGTCAAGCCAGGTAGCGGCGATGGCGGGGCTGACGCT
GCCCATCGAGAGCCATGTGTTGCAGGCTTTTGTGAGCGAAGGGCTGAAGCCGGTGATCGACCATGTGATCACCTTTGCGG
CAGGGCATCTCTATATCAGCCAGTCCGACAAGGGCGGTCTGGTGTTTGGCAGCTATCTGGATTTTTACAGCTCCTATGCG
GCGCGGGGGAACCTAGCGATGCAGGAACATACGATGGAGGCGATCACCGCCATGGTGCCCGCCGTCACCAAGGCGCGTCT
GTTGCGCAGCTGGGGCGGCATCATGGATATGACGCCGGATGGCTCGCCCATCATTGATGTGACGCCGATTGATGGTCTCT
ATCTCAATGCAGGCTGGTGCTATGGCGGCTTTAAGGCGACGCCCGCCTCGGGGGATTGTTTCGCGCATCTGATCGCTACC
GGTCGCCCGCACGAGGCGGCCACGCGGTTCAGGCTCGACCGGTTCCGCAGCGGCTTTGGTCTGATGGACGAGGAGGGCAC
CGGTGCGCAACATAATCTGCACTAA

Upstream 100 bases:

>100_bases
TGCCCACCTAGCGCAAATAGACTGTGGTTTTGTCGCCCGTGGGCTAGGAGCGCAGGCTCAAACCCGCTAGCACTTGGCAC
AGAGATTGCGGTGTGTATCA

Downstream 100 bases:

>100_bases
GCGCTTTTCGCGCAGCTGGGGAGCCTCCGGCGGGGATATTTTTAAGAAGATGAAGGGGCGGTTTTCATGAGGATCACCTG
TCCGCTGTGCGGCGCGCGCG

Product: sarcosine oxidase beta subunit family protein

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MLHIVETPFEEWAMGFSEKFSGWRVLKEGLTGNKGWTAHWRDPEPKREYDVVIVGGGGHGLATAYYLAKTHGLRNIAVLE
KGYLGGGNVGRNTTIVRANYYLPGNSEFYSHSLKLWEGMEQDLNYNAMMSQRGILNVFHNDGQRDAAVRRANSIINQGDD
AEILYRDQLKKLVPFLNYDNNRFPIMGALLQRRAGTARHDAVAWGFARGADQYGVDLIQNCEVTGIDVDGGKVTGVQTVR
GPIKAKKVALAAAGRSSQVAAMAGLTLPIESHVLQAFVSEGLKPVIDHVITFAAGHLYISQSDKGGLVFGSYLDFYSSYA
ARGNLAMQEHTMEAITAMVPAVTKARLLRSWGGIMDMTPDGSPIIDVTPIDGLYLNAGWCYGGFKATPASGDCFAHLIAT
GRPHEAATRFRLDRFRSGFGLMDEEGTGAQHNLH

Sequences:

>Translated_434_residues
MLHIVETPFEEWAMGFSEKFSGWRVLKEGLTGNKGWTAHWRDPEPKREYDVVIVGGGGHGLATAYYLAKTHGLRNIAVLE
KGYLGGGNVGRNTTIVRANYYLPGNSEFYSHSLKLWEGMEQDLNYNAMMSQRGILNVFHNDGQRDAAVRRANSIINQGDD
AEILYRDQLKKLVPFLNYDNNRFPIMGALLQRRAGTARHDAVAWGFARGADQYGVDLIQNCEVTGIDVDGGKVTGVQTVR
GPIKAKKVALAAAGRSSQVAAMAGLTLPIESHVLQAFVSEGLKPVIDHVITFAAGHLYISQSDKGGLVFGSYLDFYSSYA
ARGNLAMQEHTMEAITAMVPAVTKARLLRSWGGIMDMTPDGSPIIDVTPIDGLYLNAGWCYGGFKATPASGDCFAHLIAT
GRPHEAATRFRLDRFRSGFGLMDEEGTGAQHNLH
>Mature_434_residues
MLHIVETPFEEWAMGFSEKFSGWRVLKEGLTGNKGWTAHWRDPEPKREYDVVIVGGGGHGLATAYYLAKTHGLRNIAVLE
KGYLGGGNVGRNTTIVRANYYLPGNSEFYSHSLKLWEGMEQDLNYNAMMSQRGILNVFHNDGQRDAAVRRANSIINQGDD
AEILYRDQLKKLVPFLNYDNNRFPIMGALLQRRAGTARHDAVAWGFARGADQYGVDLIQNCEVTGIDVDGGKVTGVQTVR
GPIKAKKVALAAAGRSSQVAAMAGLTLPIESHVLQAFVSEGLKPVIDHVITFAAGHLYISQSDKGGLVFGSYLDFYSSYA
ARGNLAMQEHTMEAITAMVPAVTKARLLRSWGGIMDMTPDGSPIIDVTPIDGLYLNAGWCYGGFKATPASGDCFAHLIAT
GRPHEAATRFRLDRFRSGFGLMDEEGTGAQHNLH

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI197927446, Length=383, Percent_Identity=24.5430809399478, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI21361378, Length=383, Percent_Identity=24.5430809399478, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI24797151, Length=353, Percent_Identity=22.6628895184136, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI194306651, Length=384, Percent_Identity=23.4375, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI20130091, Length=391, Percent_Identity=25.5754475703325, Blast_Score=83, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 47442; Mature: 47442

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHIVETPFEEWAMGFSEKFSGWRVLKEGLTGNKGWTAHWRDPEPKREYDVVIVGGGGHG
CCEEECCCHHHHHCCHHHHCCHHHHHHHCCCCCCCCEECCCCCCCCCCEEEEEECCCCCH
LATAYYLAKTHGLRNIAVLEKGYLGGGNVGRNTTIVRANYYLPGNSEFYSHSLKLWEGME
HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHCHH
QDLNYNAMMSQRGILNVFHNDGQRDAAVRRANSIINQGDDAEILYRDQLKKLVPFLNYDN
HCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCC
NRFPIMGALLQRRAGTARHDAVAWGFARGADQYGVDLIQNCEVTGIDVDGGKVTGVQTVR
CCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHCHHHHHCCCEEEEECCCCEEECCHHHC
GPIKAKKVALAAAGRSSQVAAMAGLTLPIESHVLQAFVSEGLKPVIDHVITFAAGHLYIS
CCHHHHHEEEEECCCCCCEEEHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCEEEEE
QSDKGGLVFGSYLDFYSSYAARGNLAMQEHTMEAITAMVPAVTKARLLRSWGGIMDMTPD
ECCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
GSPIIDVTPIDGLYLNAGWCYGGFKATPASGDCFAHLIATGRPHEAATRFRLDRFRSGFG
CCCEEEECCCCCEEEECEEEECCEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCC
LMDEEGTGAQHNLH
CCCCCCCCCCCCCC
>Mature Secondary Structure
MLHIVETPFEEWAMGFSEKFSGWRVLKEGLTGNKGWTAHWRDPEPKREYDVVIVGGGGHG
CCEEECCCHHHHHCCHHHHCCHHHHHHHCCCCCCCCEECCCCCCCCCCEEEEEECCCCCH
LATAYYLAKTHGLRNIAVLEKGYLGGGNVGRNTTIVRANYYLPGNSEFYSHSLKLWEGME
HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHCHH
QDLNYNAMMSQRGILNVFHNDGQRDAAVRRANSIINQGDDAEILYRDQLKKLVPFLNYDN
HCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCC
NRFPIMGALLQRRAGTARHDAVAWGFARGADQYGVDLIQNCEVTGIDVDGGKVTGVQTVR
CCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHCHHHHHCCCEEEEECCCCEEECCHHHC
GPIKAKKVALAAAGRSSQVAAMAGLTLPIESHVLQAFVSEGLKPVIDHVITFAAGHLYIS
CCHHHHHEEEEECCCCCCEEEHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCEEEEE
QSDKGGLVFGSYLDFYSSYAARGNLAMQEHTMEAITAMVPAVTKARLLRSWGGIMDMTPD
ECCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
GSPIIDVTPIDGLYLNAGWCYGGFKATPASGDCFAHLIATGRPHEAATRFRLDRFRSGFG
CCCEEEECCCCCEEEECEEEECCEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCC
LMDEEGTGAQHNLH
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]