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The map label for this gene is soxD [H]

Identifier: 99081986

GI number: 99081986

Start: 2253771

End: 2254049

Strand: Reverse

Name: soxD [H]

Synonym: TM1040_2146

Alternate gene names: 99081986

Gene position: 2254049-2253771 (Counterclockwise)

Preceding gene: 99081987

Following gene: 99081985

Centisome position: 70.42

GC content: 63.08

Gene sequence:

>279_bases
ATGAGGATCACCTGTCCGCTGTGCGGCGCGCGCGACCACCGCGAGTTTACATATAGGGGGGCTGCCTTGGCAGTGCCTGC
GCTCGACGCCGGAGAGGCCGCGTGGGACGCGCATGTGCATCTGCGCGACAATCCGGCTGGACCACATGAGGAGCTTTGGC
AGCATTCGATGGGTTGCGGGGCATGGCTGAAGGTACGGCGCAATACTGCAACTCACGAGATGCTAGATGTGATGTTGGCT
GAGGACGCGGAACTCGCAGTGCCGGGGGAGGCGTCATGA

Upstream 100 bases:

>100_bases
GGAGGGCACCGGTGCGCAACATAATCTGCACTAAGCGCTTTTCGCGCAGCTGGGGAGCCTCCGGCGGGGATATTTTTAAG
AAGATGAAGGGGCGGTTTTC

Downstream 100 bases:

>100_bases
GAGTATCTGGCAAGGGGCTTCTGTCCGGCAACCGGACTGTGAATTTTTCCTTTAATGGCAAGGCCTACATGGGGCTGGAG
GGGGACACGCTGGCCTCGGC

Product: sarcosine oxidase, delta subunit, heterotetrameric

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 92; Mature: 92

Protein sequence:

>92_residues
MRITCPLCGARDHREFTYRGAALAVPALDAGEAAWDAHVHLRDNPAGPHEELWQHSMGCGAWLKVRRNTATHEMLDVMLA
EDAELAVPGEAS

Sequences:

>Translated_92_residues
MRITCPLCGARDHREFTYRGAALAVPALDAGEAAWDAHVHLRDNPAGPHEELWQHSMGCGAWLKVRRNTATHEMLDVMLA
EDAELAVPGEAS
>Mature_92_residues
MRITCPLCGARDHREFTYRGAALAVPALDAGEAAWDAHVHLRDNPAGPHEELWQHSMGCGAWLKVRRNTATHEMLDVMLA
EDAELAVPGEAS

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 10073; Mature: 10073

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: PS00482 DIHYDROOROTASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRITCPLCGARDHREFTYRGAALAVPALDAGEAAWDAHVHLRDNPAGPHEELWQHSMGCG
CEEECCCCCCCCCCEEEECCCEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCC
AWLKVRRNTATHEMLDVMLAEDAELAVPGEAS
EEEEEECCCCHHHHHHHHHCCCCCEECCCCCC
>Mature Secondary Structure
MRITCPLCGARDHREFTYRGAALAVPALDAGEAAWDAHVHLRDNPAGPHEELWQHSMGCG
CEEECCCCCCCCCCEEEECCCEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCC
AWLKVRRNTATHEMLDVMLAEDAELAVPGEAS
EEEEEECCCCHHHHHHHHHCCCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]