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The map label for this gene is nusB [H]

Identifier: 99081967

GI number: 99081967

Start: 2232999

End: 2233481

Strand: Reverse

Name: nusB [H]

Synonym: TM1040_2127

Alternate gene names: 99081967

Gene position: 2233481-2232999 (Counterclockwise)

Preceding gene: 99081968

Following gene: 99081966

Centisome position: 69.78

GC content: 58.18

Gene sequence:

>483_bases
ATGACCTCCAAAGACGCCCCGAAACCGGGAAAGAACAAGACGCAGGCGCGCTCTGCCGCGCGTCTTTATGCGGTGCAGGC
GCTGTTTCAGATGGAGCAGAGCGATCAGAGCACCAACAAGGTGATCGTGGAATTCGAAGACCATCGCTTTGGCGCGACCT
ATGAGGGTGACGAATATGCCGAAGGCGATACCAAGCTGTTTCGCCAGCTGGTCAATGATGCGGTGAACCATCAGGCCAAG
ATCGACCAGATGACCGACCGTGCCCTTGTGGCGAAATGGCCGATCGCGCGGATCGACCCAACCCTGCGGGCGTTGTTTCG
CGCTGCCGGAGCGGAATTTGTCGAGAGTGATACGCCGGTCAAAGTGGTGATCAACGAATACGTTGATATTGCGCGCGCCT
TCTTCCCGGAAGGGCGCGAGGCGAGCTTTGTCAATGCGGTGCTGGATCACATGGCACGTGAGGCAAAGCCCGAAGCCTTC
TGA

Upstream 100 bases:

>100_bases
CGCTCGCGCGTAAGTGGGGCGCCCAGACCAAGGGAGTTGGGTTTAAACCTGCCTCCGACTCGTACCGGCTCGCCTGATTT
CAACAACGGATCCCTCGCTC

Downstream 100 bases:

>100_bases
GATAGAGCGCAAAACAGCAGTAAAGAGGCGTATGACGATAAGTCCTGCGCCTTTTTTTGTTGAAACCTGAAGATCTGGGA
CCAGTTCATAGGCCTCATCT

Product: NusB antitermination factor

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MTSKDAPKPGKNKTQARSAARLYAVQALFQMEQSDQSTNKVIVEFEDHRFGATYEGDEYAEGDTKLFRQLVNDAVNHQAK
IDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVESDTPVKVVINEYVDIARAFFPEGREASFVNAVLDHMAREAKPEAF

Sequences:

>Translated_160_residues
MTSKDAPKPGKNKTQARSAARLYAVQALFQMEQSDQSTNKVIVEFEDHRFGATYEGDEYAEGDTKLFRQLVNDAVNHQAK
IDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVESDTPVKVVINEYVDIARAFFPEGREASFVNAVLDHMAREAKPEAF
>Mature_159_residues
TSKDAPKPGKNKTQARSAARLYAVQALFQMEQSDQSTNKVIVEFEDHRFGATYEGDEYAEGDTKLFRQLVNDAVNHQAKI
DQMTDRALVAKWPIARIDPTLRALFRAAGAEFVESDTPVKVVINEYVDIARAFFPEGREASFVNAVLDHMAREAKPEAF

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 17966; Mature: 17835

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSKDAPKPGKNKTQARSAARLYAVQALFQMEQSDQSTNKVIVEFEDHRFGATYEGDEYA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCC
EGDTKLFRQLVNDAVNHQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVESDTPV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHCHHHHCCCCCH
KVVINEYVDIARAFFPEGREASFVNAVLDHMAREAKPEAF
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TSKDAPKPGKNKTQARSAARLYAVQALFQMEQSDQSTNKVIVEFEDHRFGATYEGDEYA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCC
EGDTKLFRQLVNDAVNHQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVESDTPV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHCHHHHCCCCCH
KVVINEYVDIARAFFPEGREASFVNAVLDHMAREAKPEAF
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA