Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081966

Identifier: 99081966

GI number: 99081966

Start: 2232329

End: 2232745

Strand: Reverse

Name: 99081966

Synonym: TM1040_2126

Alternate gene names: NA

Gene position: 2232745-2232329 (Counterclockwise)

Preceding gene: 99081967

Following gene: 99081965

Centisome position: 69.75

GC content: 59.71

Gene sequence:

>417_bases
ATGTTTCAAAAAATAGTCGTGCCAGTGGATCTGGCACATGAAGCCGCCTTGCAGAGAGCCTTGGATGTGGCGGCTGCTAT
GGCAAAAACGCATTCCGCCGACGTGTGCTATGTGGGGGTGGCCTCGGCCAATCCGGGGGCGGTGGCGCGCAGCCCGGAGG
AATATGCCTCCAAGCTGGAGCAGTTTGCCCAAAGCCAGGCCGCACAACACGGGATCACCGCCAGCGCCCATGCCATTATG
AGCCATGATCCCGCCGTTGATCTCAACAAGGCGCTGGAACGCGCGATTTCGGATCTCAAGGCAGATCTGGTGGTGATGGC
GACCCATGTGCCGAATATCTCAGACTACATCTGGGCCGGTCACGGGGCGCATGTTGCCGCCCATAGCGCCGCATCGGTGC
TCTTGGTGCGTGATTAA

Upstream 100 bases:

>100_bases
AGCTTAAGAGTACTGGACAGACCTGCCTGTGAAATGTGCAGCGGCTGTCCTACCCGGAAACGAATAGGCCCCATCGGGGC
CGCAAGAAACAGGAGGGGAC

Downstream 100 bases:

>100_bases
CGAATAACAGAACTGAAACTCCGAAACGAAAGGCGGTAGTTATGACCGACCAAACGACGGAAACGCCCGACGGCATCCCA
AGCCCGGACGGCGCAGCACA

Product: hypothetical protein

Products: NA

Alternate protein names: UspA Domain-Containing Protein; UspA Domain Protein; Universal Stress Protein

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MFQKIVVPVDLAHEAALQRALDVAAAMAKTHSADVCYVGVASANPGAVARSPEEYASKLEQFAQSQAAQHGITASAHAIM
SHDPAVDLNKALERAISDLKADLVVMATHVPNISDYIWAGHGAHVAAHSAASVLLVRD

Sequences:

>Translated_138_residues
MFQKIVVPVDLAHEAALQRALDVAAAMAKTHSADVCYVGVASANPGAVARSPEEYASKLEQFAQSQAAQHGITASAHAIM
SHDPAVDLNKALERAISDLKADLVVMATHVPNISDYIWAGHGAHVAAHSAASVLLVRD
>Mature_138_residues
MFQKIVVPVDLAHEAALQRALDVAAAMAKTHSADVCYVGVASANPGAVARSPEEYASKLEQFAQSQAAQHGITASAHAIM
SHDPAVDLNKALERAISDLKADLVVMATHVPNISDYIWAGHGAHVAAHSAASVLLVRD

Specific function: Unknown

COG id: COG0589

COG function: function code T; Universal stress protein UspA and related nucleotide-binding proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14441; Mature: 14441

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQKIVVPVDLAHEAALQRALDVAAAMAKTHSADVCYVGVASANPGAVARSPEEYASKLE
CCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHH
QFAQSQAAQHGITASAHAIMSHDPAVDLNKALERAISDLKADLVVMATHVPNISDYIWAG
HHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCHHEECC
HGAHVAAHSAASVLLVRD
CCCCEECCCCEEEEEEEC
>Mature Secondary Structure
MFQKIVVPVDLAHEAALQRALDVAAAMAKTHSADVCYVGVASANPGAVARSPEEYASKLE
CCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHH
QFAQSQAAQHGITASAHAIMSHDPAVDLNKALERAISDLKADLVVMATHVPNISDYIWAG
HHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCHHEECC
HGAHVAAHSAASVLLVRD
CCCCEECCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA