Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081930

Identifier: 99081930

GI number: 99081930

Start: 2194104

End: 2194850

Strand: Reverse

Name: 99081930

Synonym: TM1040_2090

Alternate gene names: NA

Gene position: 2194850-2194104 (Counterclockwise)

Preceding gene: 99081933

Following gene: 99081929

Centisome position: 68.57

GC content: 64.79

Gene sequence:

>747_bases
ATGCATCTGGATGTGCAGGATCTGAGGAATTTCTATTACCGCAGCACCTTGGGGCGCGCGGCGCAGGCCTCGATCCGGGG
GCAGCTGTTGCGGATGTGGCCGGATGCCACCGGTGAGACGATCGCGGGATTTGGCTTTGCGGCGCCACTGCTGCGCCCAT
ACCTGAGCGAAGCGCGCCGGCTCATGGCGCTGATGCCGGGGCCGCAGGGCGTGATGCAGTGGCCAGCCGGGATGCCCAAT
GTATCCGTACTTTGCGAGGAGACCTCATGGCCGGTGGAAACCGGGCGTGTCGACCGTTTGGTGCTGCTTCATGGGCTTGA
GACCTCCGAGCAGCCTTCGGCCTTGCTGGATGAGTGCTGGCGCGTGATGGGGCCGCGGGGCAGGGCGATCTTTATTGTCC
CGAACCGCGCGGGGCTCTGGGCGAGATCGGACGAGACGCCGTTTGGCTACGGACGCCCTTATACGCTCACCCAGTTGGAA
AACCAGTTGCGCGCACATCAGTTCACTATCGAGCAGCATGCGGCGGCGCTCTACCGATTGCCGAGTTCGCGCCGGTTCTG
GCTCAAGTCGGGCGCGATGATCGAGCGGGTCGGACGGCGCTTGCCCGCGATGATGGCGGCGGGCGTGTTCCTTGTGGAGG
TCTCAAAGCAGACCCACCCCCAAAAGGGCCACATGACACGCGCGCGCCGCACCAACCCGATCCGGGTACTAGAGGGGCTC
TCCAACCCGATCGCGGAACCTACCTGA

Upstream 100 bases:

>100_bases
CATTTGCCACGGTGGAGGGGAAAGAGGTCTGATCGGGCATGGTCATTCGCTTTCACATTGCTAGACTGCCCCAGAGTGAC
CGAAGCAGTGAGCGTCTGCA

Downstream 100 bases:

>100_bases
GATGAGACAGACGCCCAATCGGTGCGCCTTCTGCGAGCCCAAGCGCGCGCCTTCGGGCGGCGATCCTTGCGTCCGGGCAC
CGTTGTCGACACTTCAGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MHLDVQDLRNFYYRSTLGRAAQASIRGQLLRMWPDATGETIAGFGFAAPLLRPYLSEARRLMALMPGPQGVMQWPAGMPN
VSVLCEETSWPVETGRVDRLVLLHGLETSEQPSALLDECWRVMGPRGRAIFIVPNRAGLWARSDETPFGYGRPYTLTQLE
NQLRAHQFTIEQHAAALYRLPSSRRFWLKSGAMIERVGRRLPAMMAAGVFLVEVSKQTHPQKGHMTRARRTNPIRVLEGL
SNPIAEPT

Sequences:

>Translated_248_residues
MHLDVQDLRNFYYRSTLGRAAQASIRGQLLRMWPDATGETIAGFGFAAPLLRPYLSEARRLMALMPGPQGVMQWPAGMPN
VSVLCEETSWPVETGRVDRLVLLHGLETSEQPSALLDECWRVMGPRGRAIFIVPNRAGLWARSDETPFGYGRPYTLTQLE
NQLRAHQFTIEQHAAALYRLPSSRRFWLKSGAMIERVGRRLPAMMAAGVFLVEVSKQTHPQKGHMTRARRTNPIRVLEGL
SNPIAEPT
>Mature_248_residues
MHLDVQDLRNFYYRSTLGRAAQASIRGQLLRMWPDATGETIAGFGFAAPLLRPYLSEARRLMALMPGPQGVMQWPAGMPN
VSVLCEETSWPVETGRVDRLVLLHGLETSEQPSALLDECWRVMGPRGRAIFIVPNRAGLWARSDETPFGYGRPYTLTQLE
NQLRAHQFTIEQHAAALYRLPSSRRFWLKSGAMIERVGRRLPAMMAAGVFLVEVSKQTHPQKGHMTRARRTNPIRVLEGL
SNPIAEPT

Specific function: Unknown

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013216 [H]

Pfam domain/function: PF08241 Methyltransf_11 [H]

EC number: NA

Molecular weight: Translated: 27917; Mature: 27917

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLDVQDLRNFYYRSTLGRAAQASIRGQLLRMWPDATGETIAGFGFAAPLLRPYLSEARR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LMALMPGPQGVMQWPAGMPNVSVLCEETSWPVETGRVDRLVLLHGLETSEQPSALLDECW
HHHHCCCCCHHHHCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
RVMGPRGRAIFIVPNRAGLWARSDETPFGYGRPYTLTQLENQLRAHQFTIEQHAAALYRL
HHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHC
PSSRRFWLKSGAMIERVGRRLPAMMAAGVFLVEVSKQTHPQKGHMTRARRTNPIRVLEGL
CCCCEEHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHCCCHHHHHHHH
SNPIAEPT
CCCCCCCC
>Mature Secondary Structure
MHLDVQDLRNFYYRSTLGRAAQASIRGQLLRMWPDATGETIAGFGFAAPLLRPYLSEARR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LMALMPGPQGVMQWPAGMPNVSVLCEETSWPVETGRVDRLVLLHGLETSEQPSALLDECW
HHHHCCCCCHHHHCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
RVMGPRGRAIFIVPNRAGLWARSDETPFGYGRPYTLTQLENQLRAHQFTIEQHAAALYRL
HHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHC
PSSRRFWLKSGAMIERVGRRLPAMMAAGVFLVEVSKQTHPQKGHMTRARRTNPIRVLEGL
CCCCEEHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHCCCHHHHHHHH
SNPIAEPT
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6209404 [H]