Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081933

Identifier: 99081933

GI number: 99081933

Start: 2198470

End: 2199066

Strand: Reverse

Name: 99081933

Synonym: TM1040_2093

Alternate gene names: NA

Gene position: 2199066-2198470 (Counterclockwise)

Preceding gene: 99081934

Following gene: 99081930

Centisome position: 68.7

GC content: 58.79

Gene sequence:

>597_bases
ATGAGAGGATCTGACGGTTTTGCCCCTGGTCTGAGCGGATTTGGATTGATCGCGCTGACCTACATCGTTTGCCACGGCGT
CACGATTTGGGTGATCGCCCCTGCGCAGCGTTTCTTTCTCGATGATGTGTCGGTGATCGCAAGCCTGGCCTATCTGCCGC
ATGGCGTCAGGGTTCTGAGCATCTGGCTGGTAGGTTGGCGCGCGATCCTCCCGCTCATTGCTGGTGCAGTGGCCGCCAAC
ATGATCTTTACCAGCTCGCATATTCTGGACTTGATGCAGGGCAAGATGTCGGTGTCGATCCTGATGAGCGTGTTGTCCGC
CTATGCCGCGTTTGAGGTGTTGCGCCTCCTTGGGGTCGCGTCTTATGCGGGTGGCGGGCGCAGGGTGAACTGGCGGACAC
TGCTGCTGACCGGGCTGTTGGCATCGGTCTTCAACTCGGTGTGCCAGACGCTGATTTTCTCGGGCATCATTGCGCCGGAT
GGGACGCTTTGGGAATTGGCATCCTTTGTTGTCGGAGACATGATCGGGCAGATCGTGCTGATGATCGCACTGATGATGAT
CTTTCGCGCCCTGCGTGGGCCTGCAACCCGCGCCTGA

Upstream 100 bases:

>100_bases
AATCTGACGCTTCATTTCATTATGTTACCGTAAAACAGTTTCCTCAAGGTCGTCGCCGAGAGGAATTGCCACCGCGCGTA
TTCGCCTCTACAGCTTGGGT

Downstream 100 bases:

>100_bases
TCTCTCGTTTTTTCTTCGAAAAGCGCCCGCGACCGCGGTTGGAGCGTGTGCCGCGGCCTCTTCGGCGCAGCATCGACCTT
GTCGCGGCCTGCGGCAGTTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MRGSDGFAPGLSGFGLIALTYIVCHGVTIWVIAPAQRFFLDDVSVIASLAYLPHGVRVLSIWLVGWRAILPLIAGAVAAN
MIFTSSHILDLMQGKMSVSILMSVLSAYAAFEVLRLLGVASYAGGGRRVNWRTLLLTGLLASVFNSVCQTLIFSGIIAPD
GTLWELASFVVGDMIGQIVLMIALMMIFRALRGPATRA

Sequences:

>Translated_198_residues
MRGSDGFAPGLSGFGLIALTYIVCHGVTIWVIAPAQRFFLDDVSVIASLAYLPHGVRVLSIWLVGWRAILPLIAGAVAAN
MIFTSSHILDLMQGKMSVSILMSVLSAYAAFEVLRLLGVASYAGGGRRVNWRTLLLTGLLASVFNSVCQTLIFSGIIAPD
GTLWELASFVVGDMIGQIVLMIALMMIFRALRGPATRA
>Mature_198_residues
MRGSDGFAPGLSGFGLIALTYIVCHGVTIWVIAPAQRFFLDDVSVIASLAYLPHGVRVLSIWLVGWRAILPLIAGAVAAN
MIFTSSHILDLMQGKMSVSILMSVLSAYAAFEVLRLLGVASYAGGGRRVNWRTLLLTGLLASVFNSVCQTLIFSGIIAPD
GTLWELASFVVGDMIGQIVLMIALMMIFRALRGPATRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21172; Mature: 21172

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGSDGFAPGLSGFGLIALTYIVCHGVTIWVIAPAQRFFLDDVSVIASLAYLPHGVRVLS
CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHH
IWLVGWRAILPLIAGAVAANMIFTSSHILDLMQGKMSVSILMSVLSAYAAFEVLRLLGVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SYAGGGRRVNWRTLLLTGLLASVFNSVCQTLIFSGIIAPDGTLWELASFVVGDMIGQIVL
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
MIALMMIFRALRGPATRA
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRGSDGFAPGLSGFGLIALTYIVCHGVTIWVIAPAQRFFLDDVSVIASLAYLPHGVRVLS
CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHH
IWLVGWRAILPLIAGAVAANMIFTSSHILDLMQGKMSVSILMSVLSAYAAFEVLRLLGVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SYAGGGRRVNWRTLLLTGLLASVFNSVCQTLIFSGIIAPDGTLWELASFVVGDMIGQIVL
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
MIALMMIFRALRGPATRA
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA