| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081794
Identifier: 99081794
GI number: 99081794
Start: 2058558
End: 2059079
Strand: Direct
Name: 99081794
Synonym: TM1040_1954
Alternate gene names: NA
Gene position: 2058558-2059079 (Clockwise)
Preceding gene: 99081792
Following gene: 99081799
Centisome position: 64.31
GC content: 58.62
Gene sequence:
>522_bases ATGCCAAGCGTCACTCTTTCCTATAAAACCCAAGATTTCATCGAAGCGCAGAAGCTCTCCACGCGCCAGAGTTGGCGCGA CAAGAAACGGTGGGCGCTTTTGGCCCTCGGGAGCGTGGCGGCGGTTGCTCTCCTGACCTTTACAACTGAACCTCCGCAAC GGGGCGAGATGCTCAAGATCGCATCTCTCCTGATGCCATCGGCGCTTATCGGCGGGCTCTGGTTGTCTCAGAGGGTATCC ATTGCGCTTCACGGCAGGCGGGCGCTGACGGCGTCCCCCGCTCTGAGATCGGAATTTACCTATGAGGTTCAGCCAGAGGG CCTGATTCAACGCAGCCAACACGGCGAGGCGATCGTGAAATGGACCGAGGTTCAGGCCGTCTCTGAGGATCGCAAGAGCT GGCTGATCTACCCGGCTTTTTTGCCTGCTCAGAGCTACCTGCTGCCCAAAAGATGTCTCACAGCCGACTTCCAAGAGGCG CTCAAGGCGCAGCTTATGGCGGCGGGCGCTCCAAGAAAATAG
Upstream 100 bases:
>100_bases ATTGAAGGGGCCGCCTCCGAGGGAGACCTGCCGCCCTCGCGCGTTGTCTCGCGACGACGTCTCGCGTAGCGTCGGCGCAG ATCATTTCAAAAGGCGGACC
Downstream 100 bases:
>100_bases CGCCTTCCGTCGGCAACGGTCCTTCGTCCAAGGCCCGAACGATGTGCGCCAGAGACACAAAAAAGGCCGCCCAACTGGGC GGCCTTTTCAATGCTTTATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 173; Mature: 172
Protein sequence:
>173_residues MPSVTLSYKTQDFIEAQKLSTRQSWRDKKRWALLALGSVAAVALLTFTTEPPQRGEMLKIASLLMPSALIGGLWLSQRVS IALHGRRALTASPALRSEFTYEVQPEGLIQRSQHGEAIVKWTEVQAVSEDRKSWLIYPAFLPAQSYLLPKRCLTADFQEA LKAQLMAAGAPRK
Sequences:
>Translated_173_residues MPSVTLSYKTQDFIEAQKLSTRQSWRDKKRWALLALGSVAAVALLTFTTEPPQRGEMLKIASLLMPSALIGGLWLSQRVS IALHGRRALTASPALRSEFTYEVQPEGLIQRSQHGEAIVKWTEVQAVSEDRKSWLIYPAFLPAQSYLLPKRCLTADFQEA LKAQLMAAGAPRK >Mature_172_residues PSVTLSYKTQDFIEAQKLSTRQSWRDKKRWALLALGSVAAVALLTFTTEPPQRGEMLKIASLLMPSALIGGLWLSQRVSI ALHGRRALTASPALRSEFTYEVQPEGLIQRSQHGEAIVKWTEVQAVSEDRKSWLIYPAFLPAQSYLLPKRCLTADFQEAL KAQLMAAGAPRK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19295; Mature: 19163
Theoretical pI: Translated: 10.46; Mature: 10.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSVTLSYKTQDFIEAQKLSTRQSWRDKKRWALLALGSVAAVALLTFTTEPPQRGEMLKI CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHCCCCCCCCCCHHHH ASLLMPSALIGGLWLSQRVSIALHGRRALTASPALRSEFTYEVQPEGLIQRSQHGEAIVK HHHHHHHHHHHHHHHHHHEEEEEECCEEEECCCCHHCCCEEEECCCHHHHHCCCCCEEEE WTEVQAVSEDRKSWLIYPAFLPAQSYLLPKRCLTADFQEALKAQLMAAGAPRK HHHHHHHHHCCCCEEEEEEECCCCHHHCHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure PSVTLSYKTQDFIEAQKLSTRQSWRDKKRWALLALGSVAAVALLTFTTEPPQRGEMLKI CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHCCCCCCCCCCHHHH ASLLMPSALIGGLWLSQRVSIALHGRRALTASPALRSEFTYEVQPEGLIQRSQHGEAIVK HHHHHHHHHHHHHHHHHHEEEEEECCEEEECCCCHHCCCEEEECCCHHHHHCCCCCEEEE WTEVQAVSEDRKSWLIYPAFLPAQSYLLPKRCLTADFQEALKAQLMAAGAPRK HHHHHHHHHCCCCEEEEEEECCCCHHHCHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA