| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is cya3 [H]
Identifier: 99081792
GI number: 99081792
Start: 2055091
End: 2056218
Strand: Direct
Name: cya3 [H]
Synonym: TM1040_1952
Alternate gene names: 99081792
Gene position: 2055091-2056218 (Clockwise)
Preceding gene: 99081791
Following gene: 99081794
Centisome position: 64.2
GC content: 59.75
Gene sequence:
>1128_bases TTGCCCTTTCGCGTCCTTCACTTTGCCGAGCCCGAAGAGACGGTCTTTGCCGAGGGCATCTCGGAGGACATCACAACCGA GCTATCGCGGTTTCATGCCATTCGGATCACATCCCGGATGTCGTCCTTTCAGTTTAATGCCTCAGAGCGACCAGCTCAGG AGATCGCAACAACGCTCGGGGCGGACTTCATTCTGTCAGGAACGGTGCGCCGCGCATTGAACCGTATCCGAGTCGTGGTC GAACTCTATGAGACGCTGGAAGATCGGCAAATCTGGTCCGAGCGCTTCGACCGTGCCGACGCCGACATATTCGCGGTCCT CGACGAGATTTCCGGCCTTGTCGCTGCCTGCATGACAGGCGAGGTTCAACTGGCCGAGACCCGGCGGACAAAGGCCAAAG CCGGCCAAGACCTAACCGCCTATGAGGCGCTTCTTGTCGGGCAGGACCTGCACAAAAGCGGTGATATCAGCCCACGCGTG GCCACACGTGCGGTCGCAGCCTTTTCAGAGGCGATCGACGCGGCGCCCGACTTTGCACGCGCCTACGCCTGGCGGGCCTG TTCCTTCTCACGCACGTGGGATTTCCCGGTGCGGCAAGATCAGTTCGATCAGGTTTCACAGGATGTCTTCAAGGCGCTGG AGTTCGACCCGGCAGAGGCGGAGGCTCATCGTATCGCAGGCGCCGTCTGTCGTGCGCTGCATGAGTTTGACCGCGCGACT TTGCATATCGAAAAGGCGCTCGAGCTTAATGCGAGTGATGCCCATATCGCCGCGAAATCGGCCGAGCATTTTGCGTTTAT CGGACAGCCCCAGCGCGCGCATGACCTCATCAACAAGGCGATGGCGCTCAACCCGATGTTCTCGGGCTGGTACTGGGAAA TTATTGCCCTCGCCGACTATGTGGCGAGCCAATATGAGGAGGCGCTTGCCGCAATCACGCGCGCTGCGAGCCCGACATTC GCCGGGTTTGCCTATCAGGTAGGCTCCCTCTTGGCGTTGGGCCGTACCGAGGAGGCCAAAGAAGCGGTTGCGCTTTTGAA AGCGCAATATCCAGACGTGACGCTTGCCGTTTATCAGCGCGACGGGCGCCGCTTTGCCTTTGCAGACGGCCAACCACAAA AGGTTTGA
Upstream 100 bases:
>100_bases TTGAAGCCGGAGTGCTGAAACCGACGCCTCCGATGCACAGCCCCAAAACCCGCCGACGCCCACGCCCGAACGCGCCTTCA CGCAGCCGGTGGTTGCGGTT
Downstream 100 bases:
>100_bases ACAGGCCCTCATGCGCTCCGGCCTGACCTGAGGCTTTTGCTCTTTGCTTGGTCTGAGCCTTCCGTGGCGCGTCCCGCTTT CAAGGCCCAACTCATGAGCC
Product: tetratricopeptide TPR_2
Products: NA
Alternate protein names: ATP pyrophosphate-lyase 3; Adenylyl cyclase 3 [H]
Number of amino acids: Translated: 375; Mature: 374
Protein sequence:
>375_residues MPFRVLHFAEPEETVFAEGISEDITTELSRFHAIRITSRMSSFQFNASERPAQEIATTLGADFILSGTVRRALNRIRVVV ELYETLEDRQIWSERFDRADADIFAVLDEISGLVAACMTGEVQLAETRRTKAKAGQDLTAYEALLVGQDLHKSGDISPRV ATRAVAAFSEAIDAAPDFARAYAWRACSFSRTWDFPVRQDQFDQVSQDVFKALEFDPAEAEAHRIAGAVCRALHEFDRAT LHIEKALELNASDAHIAAKSAEHFAFIGQPQRAHDLINKAMALNPMFSGWYWEIIALADYVASQYEEALAAITRAASPTF AGFAYQVGSLLALGRTEEAKEAVALLKAQYPDVTLAVYQRDGRRFAFADGQPQKV
Sequences:
>Translated_375_residues MPFRVLHFAEPEETVFAEGISEDITTELSRFHAIRITSRMSSFQFNASERPAQEIATTLGADFILSGTVRRALNRIRVVV ELYETLEDRQIWSERFDRADADIFAVLDEISGLVAACMTGEVQLAETRRTKAKAGQDLTAYEALLVGQDLHKSGDISPRV ATRAVAAFSEAIDAAPDFARAYAWRACSFSRTWDFPVRQDQFDQVSQDVFKALEFDPAEAEAHRIAGAVCRALHEFDRAT LHIEKALELNASDAHIAAKSAEHFAFIGQPQRAHDLINKAMALNPMFSGWYWEIIALADYVASQYEEALAAITRAASPTF AGFAYQVGSLLALGRTEEAKEAVALLKAQYPDVTLAVYQRDGRRFAFADGQPQKV >Mature_374_residues PFRVLHFAEPEETVFAEGISEDITTELSRFHAIRITSRMSSFQFNASERPAQEIATTLGADFILSGTVRRALNRIRVVVE LYETLEDRQIWSERFDRADADIFAVLDEISGLVAACMTGEVQLAETRRTKAKAGQDLTAYEALLVGQDLHKSGDISPRVA TRAVAAFSEAIDAAPDFARAYAWRACSFSRTWDFPVRQDQFDQVSQDVFKALEFDPAEAEAHRIAGAVCRALHEFDRATL HIEKALELNASDAHIAAKSAEHFAFIGQPQRAHDLINKAMALNPMFSGWYWEIIALADYVASQYEEALAAITRAASPTFA GFAYQVGSLLALGRTEEAKEAVALLKAQYPDVTLAVYQRDGRRFAFADGQPQKV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 5 TPR repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR001440 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF00211 Guanylate_cyc; PF00515 TPR_1 [H]
EC number: =4.6.1.1 [H]
Molecular weight: Translated: 41647; Mature: 41516
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFRVLHFAEPEETVFAEGISEDITTELSRFHAIRITSRMSSFQFNASERPAQEIATTLG CCEEEEECCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHC ADFILSGTVRRALNRIRVVVELYETLEDRQIWSERFDRADADIFAVLDEISGLVAACMTG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC EVQLAETRRTKAKAGQDLTAYEALLVGQDLHKSGDISPRVATRAVAAFSEAIDAAPDFAR CEEEHHHHHHHHHCCCCHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHH AYAWRACSFSRTWDFPVRQDQFDQVSQDVFKALEFDPAEAEAHRIAGAVCRALHEFDRAT HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH LHIEKALELNASDAHIAAKSAEHFAFIGQPQRAHDLINKAMALNPMFSGWYWEIIALADY EEHHHHHHCCCCCHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH VASQYEEALAAITRAASPTFAGFAYQVGSLLALGRTEEAKEAVALLKAQYPDVTLAVYQR HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEC DGRRFAFADGQPQKV CCCEEEECCCCCCCC >Mature Secondary Structure PFRVLHFAEPEETVFAEGISEDITTELSRFHAIRITSRMSSFQFNASERPAQEIATTLG CEEEEECCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHC ADFILSGTVRRALNRIRVVVELYETLEDRQIWSERFDRADADIFAVLDEISGLVAACMTG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC EVQLAETRRTKAKAGQDLTAYEALLVGQDLHKSGDISPRVATRAVAAFSEAIDAAPDFAR CEEEHHHHHHHHHCCCCHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHH AYAWRACSFSRTWDFPVRQDQFDQVSQDVFKALEFDPAEAEAHRIAGAVCRALHEFDRAT HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH LHIEKALELNASDAHIAAKSAEHFAFIGQPQRAHDLINKAMALNPMFSGWYWEIIALADY EEHHHHHHCCCCCHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH VASQYEEALAAITRAASPTFAGFAYQVGSLLALGRTEEAKEAVALLKAQYPDVTLAVYQR HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEC DGRRFAFADGQPQKV CCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10485295; 11481432 [H]