| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is qor [H]
Identifier: 99081751
GI number: 99081751
Start: 2012602
End: 2013576
Strand: Direct
Name: qor [H]
Synonym: TM1040_1910
Alternate gene names: 99081751
Gene position: 2012602-2013576 (Clockwise)
Preceding gene: 99081746
Following gene: 99081753
Centisome position: 62.88
GC content: 62.15
Gene sequence:
>975_bases ATGCTATCCTTTCGTATAGTAAAACATGGAACAAATGGGACTCTTTGCGACACGCCTTTCGCGCCCCCCGGACCAGGTCA AATCGAAATTGAAATACATGCCTGCGCTTTGAACTTTGCCGATTTGCTGATGATCAAGGGGAATTACCAGGATACGCCGT CCCTTCCGTTTACCCCGGGGCTGGAATGCGCAGGACGGATCACCGCTGTTGGCCCGCAAATTTCGAATTTCCGAATTGGC GACCGTGTTGCGGTTTTTGGCGGACAAGGCGGATTGGCCGAAATCGGCGTTTTTGATGCCGCTCGTGCGGTGCCGATCCC GGACACTGTCAGTTACGAGGATGCAGCGGCCGCGTTGATTGCGCATGGCACCAGCCTTCTGGCGCTGGAGCATCTGGCCC GGCTCCAGCCCGGCGAGCGCCTGCTTGTCACCGGAGCCGCCGGTGGCGTGGGCCTGACCGCAGTCGAAATCGGCAAGCTC ATGGGCGCAGAGGTGATCGCGCAGGCGCGTGGGGCAGAAAAGCTCGCGGTGGCCAAGGCAGCCGGAGCGGATCACCTGAT TGACGCCTCAGACGACCTGCGCCAGCGCGTCAAGGATCTGGGCGGTGCGGATGTGGTCTATGATGCGGTGGGAGGCGACA CGTGGGAGGCTGCCTTTCGCGCCACCAATCCGGGGGGGCGTTTGTTGCCGATCGGCTTTGCCGGTGGAGCGGTGCCGCAA ATCCCCGCCAACCACCTGCTCGTCAAAAACCTCACTGTGTTCGGCTTTTATATCGGTGGCTTGATCAAACTGCGCCCTGA GCTGGGGCAGCAGACGTTCGAGACCCTGATGCGCTGGCTGGCGGAGGGGCGGATCACGCCTCACATCAGCCACCGCCTCC CCCTGAGCGAGACGGACGCCGGGCTCGAGCTGATCCGCAGCCGCGCCGCCACCGGCAAGGTGATCATACAACCCCAAGCT GGACGGGTGCGCTGA
Upstream 100 bases:
>100_bases TTTGCAGCCACTCACCATAAATGGTGAGGCATGAAATCGGTATTGAACCACCCGTACATGATTCGAATCATACAGGCCAC AGACTGAGAGAATAACCATA
Downstream 100 bases:
>100_bases CCATTTCTGTGCCCACGGCGCGCAACCCCGGCTGAGACAGCCCGGCAAAACCCTGACGGATCAGGCTTGCGAGGTGGTCG ACATATTGCGCCCTTGACCG
Product: zinc-binding alcohol dehydrogenase
Products: NA
Alternate protein names: NADPH:quinone reductase [H]
Number of amino acids: Translated: 324; Mature: 324
Protein sequence:
>324_residues MLSFRIVKHGTNGTLCDTPFAPPGPGQIEIEIHACALNFADLLMIKGNYQDTPSLPFTPGLECAGRITAVGPQISNFRIG DRVAVFGGQGGLAEIGVFDAARAVPIPDTVSYEDAAAALIAHGTSLLALEHLARLQPGERLLVTGAAGGVGLTAVEIGKL MGAEVIAQARGAEKLAVAKAAGADHLIDASDDLRQRVKDLGGADVVYDAVGGDTWEAAFRATNPGGRLLPIGFAGGAVPQ IPANHLLVKNLTVFGFYIGGLIKLRPELGQQTFETLMRWLAEGRITPHISHRLPLSETDAGLELIRSRAATGKVIIQPQA GRVR
Sequences:
>Translated_324_residues MLSFRIVKHGTNGTLCDTPFAPPGPGQIEIEIHACALNFADLLMIKGNYQDTPSLPFTPGLECAGRITAVGPQISNFRIG DRVAVFGGQGGLAEIGVFDAARAVPIPDTVSYEDAAAALIAHGTSLLALEHLARLQPGERLLVTGAAGGVGLTAVEIGKL MGAEVIAQARGAEKLAVAKAAGADHLIDASDDLRQRVKDLGGADVVYDAVGGDTWEAAFRATNPGGRLLPIGFAGGAVPQ IPANHLLVKNLTVFGFYIGGLIKLRPELGQQTFETLMRWLAEGRITPHISHRLPLSETDAGLELIRSRAATGKVIIQPQA GRVR >Mature_324_residues MLSFRIVKHGTNGTLCDTPFAPPGPGQIEIEIHACALNFADLLMIKGNYQDTPSLPFTPGLECAGRITAVGPQISNFRIG DRVAVFGGQGGLAEIGVFDAARAVPIPDTVSYEDAAAALIAHGTSLLALEHLARLQPGERLLVTGAAGGVGLTAVEIGKL MGAEVIAQARGAEKLAVAKAAGADHLIDASDDLRQRVKDLGGADVVYDAVGGDTWEAAFRATNPGGRLLPIGFAGGAVPQ IPANHLLVKNLTVFGFYIGGLIKLRPELGQQTFETLMRWLAEGRITPHISHRLPLSETDAGLELIRSRAATGKVIIQPQA GRVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily [H]
Homologues:
Organism=Homo sapiens, GI18379349, Length=311, Percent_Identity=30.8681672025724, Blast_Score=138, Evalue=6e-33, Organism=Homo sapiens, GI24308257, Length=315, Percent_Identity=27.9365079365079, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI194239674, Length=307, Percent_Identity=28.6644951140065, Blast_Score=111, Evalue=9e-25, Organism=Homo sapiens, GI13236495, Length=307, Percent_Identity=28.6644951140065, Blast_Score=111, Evalue=9e-25, Organism=Homo sapiens, GI28557745, Length=259, Percent_Identity=30.8880308880309, Blast_Score=98, Evalue=8e-21, Organism=Homo sapiens, GI22538446, Length=335, Percent_Identity=26.5671641791045, Blast_Score=97, Evalue=3e-20, Organism=Homo sapiens, GI22538444, Length=335, Percent_Identity=26.5671641791045, Blast_Score=97, Evalue=3e-20, Organism=Homo sapiens, GI194239676, Length=296, Percent_Identity=28.7162162162162, Blast_Score=95, Evalue=8e-20, Organism=Homo sapiens, GI67078404, Length=286, Percent_Identity=24.4755244755245, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI67078406, Length=280, Percent_Identity=25, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI47519420, Length=219, Percent_Identity=26.9406392694064, Blast_Score=68, Evalue=1e-11, Organism=Escherichia coli, GI1790485, Length=321, Percent_Identity=32.398753894081, Blast_Score=132, Evalue=3e-32, Organism=Escherichia coli, GI1789651, Length=303, Percent_Identity=25.7425742574257, Blast_Score=66, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17536829, Length=291, Percent_Identity=27.1477663230241, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17507255, Length=298, Percent_Identity=26.8456375838926, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17556000, Length=277, Percent_Identity=24.9097472924188, Blast_Score=78, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6319520, Length=311, Percent_Identity=28.9389067524116, Blast_Score=109, Evalue=5e-25, Organism=Saccharomyces cerevisiae, GI6323961, Length=298, Percent_Identity=24.8322147651007, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6319621, Length=303, Percent_Identity=23.7623762376238, Blast_Score=69, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6324486, Length=285, Percent_Identity=23.5087719298246, Blast_Score=66, Evalue=7e-12, Organism=Saccharomyces cerevisiae, GI6323729, Length=286, Percent_Identity=23.0769230769231, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI45550423, Length=330, Percent_Identity=22.1212121212121, Blast_Score=70, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013149 - InterPro: IPR013154 - InterPro: IPR002085 - InterPro: IPR011032 - InterPro: IPR016040 - InterPro: IPR002364 [H]
Pfam domain/function: PF08240 ADH_N; PF00107 ADH_zinc_N [H]
EC number: =1.6.5.5 [H]
Molecular weight: Translated: 33936; Mature: 33936
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSFRIVKHGTNGTLCDTPFAPPGPGQIEIEIHACALNFADLLMIKGNYQDTPSLPFTPG CCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCCC LECAGRITAVGPQISNFRIGDRVAVFGGQGGLAEIGVFDAARAVPIPDTVSYEDAAAALI CCCCCEEEEECCCCCCEEECCEEEEEECCCCEEEEEHHCCCCCCCCCCCCCHHHHHHHHH AHGTSLLALEHLARLQPGERLLVTGAAGGVGLTAVEIGKLMGAEVIAQARGAEKLAVAKA HCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEHH AGADHLIDASDDLRQRVKDLGGADVVYDAVGGDTWEAAFRATNPGGRLLPIGFAGGAVPQ CCCCCEECCCHHHHHHHHHCCCCCEEEECCCCCCCHHEEEECCCCCEEEEEECCCCCCCC IPANHLLVKNLTVFGFYIGGLIKLRPELGQQTFETLMRWLAEGRITPHISHRLPLSETDA CCCCCEEEHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH GLELIRSRAATGKVIIQPQAGRVR HHHHHHHHCCCCEEEEECCCCCCC >Mature Secondary Structure MLSFRIVKHGTNGTLCDTPFAPPGPGQIEIEIHACALNFADLLMIKGNYQDTPSLPFTPG CCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCCC LECAGRITAVGPQISNFRIGDRVAVFGGQGGLAEIGVFDAARAVPIPDTVSYEDAAAALI CCCCCEEEEECCCCCCEEECCEEEEEECCCCEEEEEHHCCCCCCCCCCCCCHHHHHHHHH AHGTSLLALEHLARLQPGERLLVTGAAGGVGLTAVEIGKLMGAEVIAQARGAEKLAVAKA HCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEHH AGADHLIDASDDLRQRVKDLGGADVVYDAVGGDTWEAAFRATNPGGRLLPIGFAGGAVPQ CCCCCEECCCHHHHHHHHHCCCCCEEEECCCCCCCHHEEEECCCCCEEEEEECCCCCCCC IPANHLLVKNLTVFGFYIGGLIKLRPELGQQTFETLMRWLAEGRITPHISHRLPLSETDA CCCCCEEEHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH GLELIRSRAATGKVIIQPQAGRVR HHHHHHHHCCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]