| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081645
Identifier: 99081645
GI number: 99081645
Start: 1895802
End: 1896818
Strand: Direct
Name: 99081645
Synonym: TM1040_1804
Alternate gene names: NA
Gene position: 1895802-1896818 (Clockwise)
Preceding gene: 99081640
Following gene: 99081648
Centisome position: 59.23
GC content: 63.91
Gene sequence:
>1017_bases GTGACCGACGTGACCAACGACACCCTTTCCCATTATGCGCTCCCGGCCTACCCGGCCGAGCAGTTTTGCGTGGACATCGG CGCCAACGCGGGCGACCCGATTGGGATTCTGGATGATTTGGTGATGGATGACATCTACGAGCTCACCAGTGATGCGCGCC TGCGACGGCTCGCCTTTGGGGTGTCAACAGAGGGCACGATCACCCTCCACTCCGAGAGCGAGATGGGCCAGGACGGGGCG CGACTGCATCTGGATTGCGCCGTCACACTGATGCCCGACCTGGGCAGCGCCATCGAGGCGCTGATCGCGGTTGAGGTGGA TAATGAGGGGTTGATAGCCCGGCTCTACCTGATCCCGCAGGCCCCACTTGCGCAGGGCACGGGCTATCGTCTGGTGCGCG CCAGCCGCGAGCCGGTCTGGACACGTTTGGCGCAACTCAGCTGTGTGGCCTTTTCGCGCGGCACGCATATCACGATGGGC ACGGGAGAGCAGCGCCCGATTGAGATGCTGCGCGCCGGCGACCGGGTCTTGACCCGCAACAGTGGCGCGCGCCGCATCAC CTGGGTGGGTCACACCACCGTCCGCGCGGTCGGAGAAATGGCGCCCATCCTGATCCGCCAAGGGGCGCTCAACAATGCGC GCGACCTTTTGGTGAGCCCGGACCACCGGCTCATGATCTATCAGCGATCAGATGCGCTCGGGGCGGGACGGAATGAATTG ATGATCCGCGCCCGCGATCTTGTGAATGGCGACAGCGTGGTGGTTCAGGACGGCGGCTTTGTGGACTACTATCAGATCCT GTTTGACCGCCATCACATCATCTATGCCGAGGGCATTGCCGCGGAATCGATGCTGGTGGACCCGGTCACGCGTCCAGCCC TCCCCGAAGAGGTGCAGCAACGTCTGACGCAGCCCCGCCGGCATGGAACGCGCGGCGATCACGGCTTGGAAATCCGGCGC CCAATGCTCAGTCACCCAGACACCGTAGACTTGCTCAAACGCGCCTCGTTGCGCTGA
Upstream 100 bases:
>100_bases CGCCCGTTTCTTGCCCAAGTGTGAACCTAGTCTTTACCACGAAAGGCGCAGTGTAAGTGCGCGCGCATCCGGCCCGACAA CAGTGATTGACCCGAAGACA
Downstream 100 bases:
>100_bases CCGCCGTTGCCTCGGACGTGACGGCGCACGTGCGCAAAGTGTCAATTTTACGCCTTTCAGGATAGCGGGACACGTCCGTC AGGACCGGCCTTGCTGCATG
Product: hypothetical protein
Products: NA
Alternate protein names: Type I Secretion Target Repeat-Containing Protein; Hemagglutinin-Related Protein; Peptidase Metallopeptidase; Peroxidase; Bifunctional Hemolysin/Adenylate Cyclase
Number of amino acids: Translated: 338; Mature: 337
Protein sequence:
>338_residues MTDVTNDTLSHYALPAYPAEQFCVDIGANAGDPIGILDDLVMDDIYELTSDARLRRLAFGVSTEGTITLHSESEMGQDGA RLHLDCAVTLMPDLGSAIEALIAVEVDNEGLIARLYLIPQAPLAQGTGYRLVRASREPVWTRLAQLSCVAFSRGTHITMG TGEQRPIEMLRAGDRVLTRNSGARRITWVGHTTVRAVGEMAPILIRQGALNNARDLLVSPDHRLMIYQRSDALGAGRNEL MIRARDLVNGDSVVVQDGGFVDYYQILFDRHHIIYAEGIAAESMLVDPVTRPALPEEVQQRLTQPRRHGTRGDHGLEIRR PMLSHPDTVDLLKRASLR
Sequences:
>Translated_338_residues MTDVTNDTLSHYALPAYPAEQFCVDIGANAGDPIGILDDLVMDDIYELTSDARLRRLAFGVSTEGTITLHSESEMGQDGA RLHLDCAVTLMPDLGSAIEALIAVEVDNEGLIARLYLIPQAPLAQGTGYRLVRASREPVWTRLAQLSCVAFSRGTHITMG TGEQRPIEMLRAGDRVLTRNSGARRITWVGHTTVRAVGEMAPILIRQGALNNARDLLVSPDHRLMIYQRSDALGAGRNEL MIRARDLVNGDSVVVQDGGFVDYYQILFDRHHIIYAEGIAAESMLVDPVTRPALPEEVQQRLTQPRRHGTRGDHGLEIRR PMLSHPDTVDLLKRASLR >Mature_337_residues TDVTNDTLSHYALPAYPAEQFCVDIGANAGDPIGILDDLVMDDIYELTSDARLRRLAFGVSTEGTITLHSESEMGQDGAR LHLDCAVTLMPDLGSAIEALIAVEVDNEGLIARLYLIPQAPLAQGTGYRLVRASREPVWTRLAQLSCVAFSRGTHITMGT GEQRPIEMLRAGDRVLTRNSGARRITWVGHTTVRAVGEMAPILIRQGALNNARDLLVSPDHRLMIYQRSDALGAGRNELM IRARDLVNGDSVVVQDGGFVDYYQILFDRHHIIYAEGIAAESMLVDPVTRPALPEEVQQRLTQPRRHGTRGDHGLEIRRP MLSHPDTVDLLKRASLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37301; Mature: 37170
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDVTNDTLSHYALPAYPAEQFCVDIGANAGDPIGILDDLVMDDIYELTSDARLRRLAFG CCCCCCCHHHHCCCCCCCHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC VSTEGTITLHSESEMGQDGARLHLDCAVTLMPDLGSAIEALIAVEVDNEGLIARLYLIPQ CCCCCEEEEECCCCCCCCCCEEEEEEEEEECCCHHHHEEEEEEEEECCCCEEEEEEEECC APLAQGTGYRLVRASREPVWTRLAQLSCVAFSRGTHITMGTGEQRPIEMLRAGDRVLTRN CCCCCCCCEEEEECCCCHHHHHHHHHHHEEECCCCEEEECCCCCCHHHHHHCCCEEEECC SGARRITWVGHTTVRAVGEMAPILIRQGALNNARDLLVSPDHRLMIYQRSDALGAGRNEL CCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCE MIRARDLVNGDSVVVQDGGFVDYYQILFDRHHIIYAEGIAAESMLVDPVTRPALPEEVQQ EEEEECCCCCCEEEEECCCCHHHHHHHHCCCEEEEECCCCCCCEEECCCCCCCCHHHHHH RLTQPRRHGTRGDHGLEIRRPMLSHPDTVDLLKRASLR HHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHCCC >Mature Secondary Structure TDVTNDTLSHYALPAYPAEQFCVDIGANAGDPIGILDDLVMDDIYELTSDARLRRLAFG CCCCCCHHHHCCCCCCCHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC VSTEGTITLHSESEMGQDGARLHLDCAVTLMPDLGSAIEALIAVEVDNEGLIARLYLIPQ CCCCCEEEEECCCCCCCCCCEEEEEEEEEECCCHHHHEEEEEEEEECCCCEEEEEEEECC APLAQGTGYRLVRASREPVWTRLAQLSCVAFSRGTHITMGTGEQRPIEMLRAGDRVLTRN CCCCCCCCEEEEECCCCHHHHHHHHHHHEEECCCCEEEECCCCCCHHHHHHCCCEEEECC SGARRITWVGHTTVRAVGEMAPILIRQGALNNARDLLVSPDHRLMIYQRSDALGAGRNEL CCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCE MIRARDLVNGDSVVVQDGGFVDYYQILFDRHHIIYAEGIAAESMLVDPVTRPALPEEVQQ EEEEECCCCCCEEEEECCCCHHHHHHHHCCCEEEEECCCCCCCEEECCCCCCCCHHHHHH RLTQPRRHGTRGDHGLEIRRPMLSHPDTVDLLKRASLR HHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA