| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081614
Identifier: 99081614
GI number: 99081614
Start: 1864836
End: 1867199
Strand: Direct
Name: 99081614
Synonym: TM1040_1773
Alternate gene names: NA
Gene position: 1864836-1867199 (Clockwise)
Preceding gene: 99081613
Following gene: 99081615
Centisome position: 58.26
GC content: 60.62
Gene sequence:
>2364_bases ATGCGGATCTATCTTCATATCGGGCTGCACCGCGCAGGATCGGAACGGATACAGGCGGTGTTGGCCGACAAGCGCGACCA GCTGCGCGCACGCGGAATTCTGGTGCCGCGAGCGGCGGGGAGCAAGAACCACACCCGCCTGTTCATGGCCGTGAGCGATC CCGAGCATGTTGACCCGCTGCGCTACAATCGCGGCTTCATCAGTCCGGAAAAACAGGCGGACCTGCGCGCAAACCTGCAG GAGAGCCTCTCGCGCGACATTACCCAGTATCAGCCCCACACGCTCATCCTGAGCGCGCATCAGCTCGGAACGCATCTGTC GCGCAAAAGCGAGCTGGAACGGCTGAAGGCTCTGCTGGCGCCGCTCTCGGATGACATTCGGATCGTTGCCCATGTCGAGG CACAGGCGCGGATGCTCGCGGATGTCTTTGCAGAACAAGTCTTTGAGGGGCGCGCCGCCAGCCTCTCGCGCGAGGTGGAA CTGACCCGCGAAGACAGCTGGTGGTCGGCGGCGCTTGACACCCTGCCACCGGTTGATCCGCAGGCAGGTCAGTTCGAGGA AACCCAAGGCGCGCCATTCTGGCTCGATTTCAAGGCCTTGCAAGGATTTTGGGAGGAGGTTTTTGGCGCCGGAACGGTCT CCTTCCGCAGCTACCGAGCAGAGGTCTTTGACAGCGCGGACGTGACGCAGGAAGTCTGTGAGACCTTTGGCATTGCGGAA CAGATTGGCCGGGTGGATCCAGCCAAACGCAGCAGGCCAATCCCCGCCGCATGGCTCACACGTGGGCGGCAATTCAACGC ATTGCTCTTGCGGCTTTTGGCACAGGGCAACCATATCCTGCCACGCAAGCTGTGGCGGCAGATGATTCAGGACCTCAAGG TCGATGGCCCGCCGTTGGACCCAGCCAGACTGGGCGCGGTGACACGGTTTTTTACGGCTCAGAACACCCATCTCTGTGCA GAGCATGCGGCGCTGTCGCAGGATGTCTTTGAGATCGAGACCTCCACCGAAGACTGGTCAGAGGCCCCCCCACTACAGGG GTTTCGCGCCTCGCAGTATCTCCTCGCCTTCCTCTACCGGATCGAAAAGGCCACCAATGAAGAGCGCGCCGCACGCGAGG GGGACCTCAAGGCGCACCAGAGCGCGCGCGCGGCTCAGCAGAGCGCAGAAGGTGCCGCCCCCACAGCCAAGGCTCGGCGC CTGATGCCCCCGCTTGCGCTCAAGAATTTTGCGATGCTTCAGGGCTCGACTTTCAAGCCACACGACCGGCTGGGTCGTGT GGATGAGACCGCCGAAAGACCGCCCTACACAGAGGTGCCCCCCCGCATCCTGTCAAAGGGGCAAAGCGGCAATGTCATCG TCGGCTGCATGAAGGATGAGGCCCCCTATATCCTTGAGTGGGTCGCCTATCACCGCATGATCGGGGTGGATCATTTCCTG ATCTACACCAACGGCTGCAGCGACGGCACCGCAGAGCTCCTTGATCGGTTGCAGGCGCTTGGCATCCTTGAGCATCGCAA CAACGACAATTGGAAAGGCAACTCGCCCCAGCAATACGCCCTCAATCAGGCGCTGAAAGAGCCAGTGATCAAACAGGCCG ATTGGGTGATCCACATCGACGTAGATGAGTACATCAACGTGCGCTGCGGCAATGGGACATTGGCTGATTTCTTCGACCAT GTGCCAGATGCCACCAATGTCGCGATGACATGGCGGCTCTTTGGTCACAACGGCATCACCACGTTGAACGACCGCCCGGT GATTGCACAATTTGATCGCTGCGCGCCCAAGTTCTGCCCCAAGCCCCATACCGTCTGGGGCTTTAAGACCATGTTCAAAA CCATTGGCGCCTATCAGAAAATCTCTTGCCACCGGCCCAACAAGCTGGAGGAGGAAAAGCGCGCGCAGGTGAAATGGGTC AATGGTTCTGGTGAGGACATGACCCATGAGGTGATCGACAACGGCTGGCGCAGCTCGAAAAAGTCCATCGGCTATGATCT TCTGCAACTCAATCATTATGCGTTGCGCTCGGCAGAGAGCTTCCTTGTGAAACGCCAGCGTGGGCGGGCGCTGCATGTGG ATCGCTCGATCGGGCTCAACTACTGGATTCGCATGGATTGGAACGACCATCGCGACATCACCATCCAGCGCAACCTGCCC AGGATGCAGGCGGAGATGGATCGCTTGCTCGCAGATGAGACCCTGCGCGCCCTCCACGAGGCGGGGTTGGCGTGGCATCG CGCCAAGGCGGCAGAGCTGCACCAGCAGGAGGAATTCGAAGCGCTTTATCAGCAGGCGCTGGAGATCGACATCCCCGCAA CCGAGCGCGTGGCCTGGGCGCTCTCGCTGGATCTGGAGAGCTGA
Upstream 100 bases:
>100_bases GTTTTCTGGGCCGCCCCCTGCCATGGTGGGGACAATCCAATATCAATCCAGAAGGGCCCTCTGCGCGCGGGCGCGGCAGA CGACAGGACGAGGCAGGCTG
Downstream 100 bases:
>100_bases CCATGCGCACGCTGGCCGTATTGACAGTTCGCAATGAGGGGGCCTTTCTGCTCGAATGGCTGGCGCACCACAAGGCAGTA GGATTTACGGATTTTCTCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 787; Mature: 787
Protein sequence:
>787_residues MRIYLHIGLHRAGSERIQAVLADKRDQLRARGILVPRAAGSKNHTRLFMAVSDPEHVDPLRYNRGFISPEKQADLRANLQ ESLSRDITQYQPHTLILSAHQLGTHLSRKSELERLKALLAPLSDDIRIVAHVEAQARMLADVFAEQVFEGRAASLSREVE LTREDSWWSAALDTLPPVDPQAGQFEETQGAPFWLDFKALQGFWEEVFGAGTVSFRSYRAEVFDSADVTQEVCETFGIAE QIGRVDPAKRSRPIPAAWLTRGRQFNALLLRLLAQGNHILPRKLWRQMIQDLKVDGPPLDPARLGAVTRFFTAQNTHLCA EHAALSQDVFEIETSTEDWSEAPPLQGFRASQYLLAFLYRIEKATNEERAAREGDLKAHQSARAAQQSAEGAAPTAKARR LMPPLALKNFAMLQGSTFKPHDRLGRVDETAERPPYTEVPPRILSKGQSGNVIVGCMKDEAPYILEWVAYHRMIGVDHFL IYTNGCSDGTAELLDRLQALGILEHRNNDNWKGNSPQQYALNQALKEPVIKQADWVIHIDVDEYINVRCGNGTLADFFDH VPDATNVAMTWRLFGHNGITTLNDRPVIAQFDRCAPKFCPKPHTVWGFKTMFKTIGAYQKISCHRPNKLEEEKRAQVKWV NGSGEDMTHEVIDNGWRSSKKSIGYDLLQLNHYALRSAESFLVKRQRGRALHVDRSIGLNYWIRMDWNDHRDITIQRNLP RMQAEMDRLLADETLRALHEAGLAWHRAKAAELHQQEEFEALYQQALEIDIPATERVAWALSLDLES
Sequences:
>Translated_787_residues MRIYLHIGLHRAGSERIQAVLADKRDQLRARGILVPRAAGSKNHTRLFMAVSDPEHVDPLRYNRGFISPEKQADLRANLQ ESLSRDITQYQPHTLILSAHQLGTHLSRKSELERLKALLAPLSDDIRIVAHVEAQARMLADVFAEQVFEGRAASLSREVE LTREDSWWSAALDTLPPVDPQAGQFEETQGAPFWLDFKALQGFWEEVFGAGTVSFRSYRAEVFDSADVTQEVCETFGIAE QIGRVDPAKRSRPIPAAWLTRGRQFNALLLRLLAQGNHILPRKLWRQMIQDLKVDGPPLDPARLGAVTRFFTAQNTHLCA EHAALSQDVFEIETSTEDWSEAPPLQGFRASQYLLAFLYRIEKATNEERAAREGDLKAHQSARAAQQSAEGAAPTAKARR LMPPLALKNFAMLQGSTFKPHDRLGRVDETAERPPYTEVPPRILSKGQSGNVIVGCMKDEAPYILEWVAYHRMIGVDHFL IYTNGCSDGTAELLDRLQALGILEHRNNDNWKGNSPQQYALNQALKEPVIKQADWVIHIDVDEYINVRCGNGTLADFFDH VPDATNVAMTWRLFGHNGITTLNDRPVIAQFDRCAPKFCPKPHTVWGFKTMFKTIGAYQKISCHRPNKLEEEKRAQVKWV NGSGEDMTHEVIDNGWRSSKKSIGYDLLQLNHYALRSAESFLVKRQRGRALHVDRSIGLNYWIRMDWNDHRDITIQRNLP RMQAEMDRLLADETLRALHEAGLAWHRAKAAELHQQEEFEALYQQALEIDIPATERVAWALSLDLES >Mature_787_residues MRIYLHIGLHRAGSERIQAVLADKRDQLRARGILVPRAAGSKNHTRLFMAVSDPEHVDPLRYNRGFISPEKQADLRANLQ ESLSRDITQYQPHTLILSAHQLGTHLSRKSELERLKALLAPLSDDIRIVAHVEAQARMLADVFAEQVFEGRAASLSREVE LTREDSWWSAALDTLPPVDPQAGQFEETQGAPFWLDFKALQGFWEEVFGAGTVSFRSYRAEVFDSADVTQEVCETFGIAE QIGRVDPAKRSRPIPAAWLTRGRQFNALLLRLLAQGNHILPRKLWRQMIQDLKVDGPPLDPARLGAVTRFFTAQNTHLCA EHAALSQDVFEIETSTEDWSEAPPLQGFRASQYLLAFLYRIEKATNEERAAREGDLKAHQSARAAQQSAEGAAPTAKARR LMPPLALKNFAMLQGSTFKPHDRLGRVDETAERPPYTEVPPRILSKGQSGNVIVGCMKDEAPYILEWVAYHRMIGVDHFL IYTNGCSDGTAELLDRLQALGILEHRNNDNWKGNSPQQYALNQALKEPVIKQADWVIHIDVDEYINVRCGNGTLADFFDH VPDATNVAMTWRLFGHNGITTLNDRPVIAQFDRCAPKFCPKPHTVWGFKTMFKTIGAYQKISCHRPNKLEEEKRAQVKWV NGSGEDMTHEVIDNGWRSSKKSIGYDLLQLNHYALRSAESFLVKRQRGRALHVDRSIGLNYWIRMDWNDHRDITIQRNLP RMQAEMDRLLADETLRALHEAGLAWHRAKAAELHQQEEFEALYQQALEIDIPATERVAWALSLDLES
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89296; Mature: 89296
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIYLHIGLHRAGSERIQAVLADKRDQLRARGILVPRAAGSKNHTRLFMAVSDPEHVDPL CEEEEEECCCCCCHHHHHHHHHCCHHHHHHCCEEEECCCCCCCCEEEEEEECCCCCCCCC RYNRGFISPEKQADLRANLQESLSRDITQYQPHTLILSAHQLGTHLSRKSELERLKALLA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHC PLSDDIRIVAHVEAQARMLADVFAEQVFEGRAASLSREVELTREDSWWSAALDTLPPVDP CCCCCEEEEEECHHHHHHHHHHHHHHHHCCHHHHHHHHEEEECCCCHHHHHHHCCCCCCC QAGQFEETQGAPFWLDFKALQGFWEEVFGAGTVSFRSYRAEVFDSADVTQEVCETFGIAE CCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCHHH QIGRVDPAKRSRPIPAAWLTRGRQFNALLLRLLAQGNHILPRKLWRQMIQDLKVDGPPLD HHCCCCCHHCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCC PARLGAVTRFFTAQNTHLCAEHAALSQDVFEIETSTEDWSEAPPLQGFRASQYLLAFLYR HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHH IEKATNEERAAREGDLKAHQSARAAQQSAEGAAPTAKARRLMPPLALKNFAMLQGSTFKP HHHHCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCC HDRLGRVDETAERPPYTEVPPRILSKGQSGNVIVGCMKDEAPYILEWVAYHRMIGVDHFL HHHCCCCCHHHCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEE IYTNGCSDGTAELLDRLQALGILEHRNNDNWKGNSPQQYALNQALKEPVIKQADWVIHID EEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE VDEYINVRCGNGTLADFFDHVPDATNVAMTWRLFGHNGITTLNDRPVIAQFDRCAPKFCP HHCEEEEEECCCCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCC KPHTVWGFKTMFKTIGAYQKISCHRPNKLEEEKRAQVKWVNGSGEDMTHEVIDNGWRSSK CCCCCHHHHHHHHHHCCHHHCCCCCCCCCCHHHCCEEEEECCCCCCHHHHHHHCCHHCHH KSIGYDLLQLNHYALRSAESFLVKRQRGRALHVDRSIGLNYWIRMDWNDHRDITIQRNLP HHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCEEEECCCC RMQAEMDRLLADETLRALHEAGLAWHRAKAAELHQQEEFEALYQQALEIDIPATERVAWA HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEE LSLDLES EEEECCC >Mature Secondary Structure MRIYLHIGLHRAGSERIQAVLADKRDQLRARGILVPRAAGSKNHTRLFMAVSDPEHVDPL CEEEEEECCCCCCHHHHHHHHHCCHHHHHHCCEEEECCCCCCCCEEEEEEECCCCCCCCC RYNRGFISPEKQADLRANLQESLSRDITQYQPHTLILSAHQLGTHLSRKSELERLKALLA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHC PLSDDIRIVAHVEAQARMLADVFAEQVFEGRAASLSREVELTREDSWWSAALDTLPPVDP CCCCCEEEEEECHHHHHHHHHHHHHHHHCCHHHHHHHHEEEECCCCHHHHHHHCCCCCCC QAGQFEETQGAPFWLDFKALQGFWEEVFGAGTVSFRSYRAEVFDSADVTQEVCETFGIAE CCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCHHH QIGRVDPAKRSRPIPAAWLTRGRQFNALLLRLLAQGNHILPRKLWRQMIQDLKVDGPPLD HHCCCCCHHCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCC PARLGAVTRFFTAQNTHLCAEHAALSQDVFEIETSTEDWSEAPPLQGFRASQYLLAFLYR HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHH IEKATNEERAAREGDLKAHQSARAAQQSAEGAAPTAKARRLMPPLALKNFAMLQGSTFKP HHHHCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCC HDRLGRVDETAERPPYTEVPPRILSKGQSGNVIVGCMKDEAPYILEWVAYHRMIGVDHFL HHHCCCCCHHHCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEE IYTNGCSDGTAELLDRLQALGILEHRNNDNWKGNSPQQYALNQALKEPVIKQADWVIHID EEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE VDEYINVRCGNGTLADFFDHVPDATNVAMTWRLFGHNGITTLNDRPVIAQFDRCAPKFCP HHCEEEEEECCCCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCC KPHTVWGFKTMFKTIGAYQKISCHRPNKLEEEKRAQVKWVNGSGEDMTHEVIDNGWRSSK CCCCCHHHHHHHHHHCCHHHCCCCCCCCCCHHHCCEEEEECCCCCCHHHHHHHCCHHCHH KSIGYDLLQLNHYALRSAESFLVKRQRGRALHVDRSIGLNYWIRMDWNDHRDITIQRNLP HHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCEEEECCCC RMQAEMDRLLADETLRALHEAGLAWHRAKAAELHQQEEFEALYQQALEIDIPATERVAWA HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEE LSLDLES EEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA