| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081615
Identifier: 99081615
GI number: 99081615
Start: 1867202
End: 1868335
Strand: Direct
Name: 99081615
Synonym: TM1040_1774
Alternate gene names: NA
Gene position: 1867202-1868335 (Clockwise)
Preceding gene: 99081614
Following gene: 99081616
Centisome position: 58.33
GC content: 60.14
Gene sequence:
>1134_bases ATGCGCACGCTGGCCGTATTGACAGTTCGCAATGAGGGGGCCTTTCTGCTCGAATGGCTGGCGCACCACAAGGCAGTAGG ATTTACGGATTTTCTCGTCTTTTCAAACAACTGCGACGACCCCACCGCCGAGATCCTGACCCGTCTCGATGAGATGGGCC ATCTGGCGCATGTGGAAAATACCGGCCCCTTCGACAAGGGCGGCATCCAGTTCACCGCCATGAAACGCGCAGACAAGCAT CGCCTCGCCAAACGCGCCGACTGGATCATGGCGCTGGATGTGGATGAGTTCGTGAACATCCACACCGGGCGCGGACAGAT CTCGGACCTGCTCGAAGCACTGCCAGAGGCGGATGCCATCACGCTGACATGGCGGCTCTTTGGCAACGCGGATCAGGTCC GCTACGAAGGCGAGCGTGTCACCGATCGCTTCACGCGCGCCGCGCCCGCAGTCATGCATTGGCCTTGGCGCGCGTCGATG TTCAAAACGCTCTATCGCAATTCAGGCGTGTATCGCAAAATCGGCATCCACCGCCCCCGCAACGTGAAGGATGAAGCCGC CCGCGACCAATACCGCTGGTTCGACTGCGTCGGACGCGAATTGATGGGCGATTTCAAAACCAAGCGCGTGTTCTCAAACT ACGGTCAGGACAACTACCAGCTGGCGCAACTCAATCATTATCCGCTCGGCGCAATGGAGAGCTATATTCTCAAGGCCAAC CGGGGACGCGCGGTGCACTCAGAGGATCTTCTGGATGTCGACTACTGGGTGGAGCGCAACTTCAACACGGACGAGGACAC CTCGATCAGGCGCTACCGGGCGGCGCGCGATGCGATCCTCGACCTGTTCTTGGCTGACGAGGCTCTGCGCAAACTCCACG AGCGTGCCGTGCAATGGCGCAAGGACCGCTTCATGGAACTGATGCGCGAAGAACCTTACCGCGCACTCTTTGGCCGACTC ATGATGACGCCTCCCTCGCGCCCGATCAGCCAGGTCACGGGCCGTACCCTGGCCGGATTTGCCACCCTTGGACACCAAAA CCAGCGCAGGATCCGCGTCAAGAAGGACACCGTACCGGGTGAAACACCAAGTGGTGACAGCCCGAACACAAGCCCGCTGC CCGACAAGGACTAG
Upstream 100 bases:
>100_bases AGGAGGAATTCGAAGCGCTTTATCAGCAGGCGCTGGAGATCGACATCCCCGCAACCGAGCGCGTGGCCTGGGCGCTCTCG CTGGATCTGGAGAGCTGACC
Downstream 100 bases:
>100_bases CCCGCTGATCTCGCCCTGCTCTCGGTGGGATTATCGCCAACTGAGCAACAATGGCCGACAATTGGGCCAAGGTTTTTCTA AATTTAGCCTCAATCTCAGC
Product: glycosyl transferase, group 2 family protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 377; Mature: 377
Protein sequence:
>377_residues MRTLAVLTVRNEGAFLLEWLAHHKAVGFTDFLVFSNNCDDPTAEILTRLDEMGHLAHVENTGPFDKGGIQFTAMKRADKH RLAKRADWIMALDVDEFVNIHTGRGQISDLLEALPEADAITLTWRLFGNADQVRYEGERVTDRFTRAAPAVMHWPWRASM FKTLYRNSGVYRKIGIHRPRNVKDEAARDQYRWFDCVGRELMGDFKTKRVFSNYGQDNYQLAQLNHYPLGAMESYILKAN RGRAVHSEDLLDVDYWVERNFNTDEDTSIRRYRAARDAILDLFLADEALRKLHERAVQWRKDRFMELMREEPYRALFGRL MMTPPSRPISQVTGRTLAGFATLGHQNQRRIRVKKDTVPGETPSGDSPNTSPLPDKD
Sequences:
>Translated_377_residues MRTLAVLTVRNEGAFLLEWLAHHKAVGFTDFLVFSNNCDDPTAEILTRLDEMGHLAHVENTGPFDKGGIQFTAMKRADKH RLAKRADWIMALDVDEFVNIHTGRGQISDLLEALPEADAITLTWRLFGNADQVRYEGERVTDRFTRAAPAVMHWPWRASM FKTLYRNSGVYRKIGIHRPRNVKDEAARDQYRWFDCVGRELMGDFKTKRVFSNYGQDNYQLAQLNHYPLGAMESYILKAN RGRAVHSEDLLDVDYWVERNFNTDEDTSIRRYRAARDAILDLFLADEALRKLHERAVQWRKDRFMELMREEPYRALFGRL MMTPPSRPISQVTGRTLAGFATLGHQNQRRIRVKKDTVPGETPSGDSPNTSPLPDKD >Mature_377_residues MRTLAVLTVRNEGAFLLEWLAHHKAVGFTDFLVFSNNCDDPTAEILTRLDEMGHLAHVENTGPFDKGGIQFTAMKRADKH RLAKRADWIMALDVDEFVNIHTGRGQISDLLEALPEADAITLTWRLFGNADQVRYEGERVTDRFTRAAPAVMHWPWRASM FKTLYRNSGVYRKIGIHRPRNVKDEAARDQYRWFDCVGRELMGDFKTKRVFSNYGQDNYQLAQLNHYPLGAMESYILKAN RGRAVHSEDLLDVDYWVERNFNTDEDTSIRRYRAARDAILDLFLADEALRKLHERAVQWRKDRFMELMREEPYRALFGRL MMTPPSRPISQVTGRTLAGFATLGHQNQRRIRVKKDTVPGETPSGDSPNTSPLPDKD
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43574; Mature: 43574
Theoretical pI: Translated: 8.93; Mature: 8.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTLAVLTVRNEGAFLLEWLAHHKAVGFTDFLVFSNNCDDPTAEILTRLDEMGHLAHVEN CCEEEEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCEEEECC TGPFDKGGIQFTAMKRADKHRLAKRADWIMALDVDEFVNIHTGRGQISDLLEALPEADAI CCCCCCCCEEEEEHHHHHHHHHHHHCCEEEEEEHHHHHEECCCCCHHHHHHHHCCCCCEE TLTWRLFGNADQVRYEGERVTDRFTRAAPAVMHWPWRASMFKTLYRNSGVYRKIGIHRPR EEEEEEECCCCCEEECCHHHHHHHHHHCCHHEECCHHHHHHHHHHHCCCCEEEECCCCCC NVKDEAARDQYRWFDCVGRELMGDFKTKRVFSNYGQDNYQLAQLNHYPLGAMESYILKAN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCC RGRAVHSEDLLDVDYWVERNFNTDEDTSIRRYRAARDAILDLFLADEALRKLHERAVQWR CCCEECCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KDRFMELMREEPYRALFGRLMMTPPSRPISQVTGRTLAGFATLGHQNQRRIRVKKDTVPG HHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHCCCCCCEEEEEECCCCC ETPSGDSPNTSPLPDKD CCCCCCCCCCCCCCCCC >Mature Secondary Structure MRTLAVLTVRNEGAFLLEWLAHHKAVGFTDFLVFSNNCDDPTAEILTRLDEMGHLAHVEN CCEEEEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCEEEECC TGPFDKGGIQFTAMKRADKHRLAKRADWIMALDVDEFVNIHTGRGQISDLLEALPEADAI CCCCCCCCEEEEEHHHHHHHHHHHHCCEEEEEEHHHHHEECCCCCHHHHHHHHCCCCCEE TLTWRLFGNADQVRYEGERVTDRFTRAAPAVMHWPWRASMFKTLYRNSGVYRKIGIHRPR EEEEEEECCCCCEEECCHHHHHHHHHHCCHHEECCHHHHHHHHHHHCCCCEEEECCCCCC NVKDEAARDQYRWFDCVGRELMGDFKTKRVFSNYGQDNYQLAQLNHYPLGAMESYILKAN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCC RGRAVHSEDLLDVDYWVERNFNTDEDTSIRRYRAARDAILDLFLADEALRKLHERAVQWR CCCEECCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KDRFMELMREEPYRALFGRLMMTPPSRPISQVTGRTLAGFATLGHQNQRRIRVKKDTVPG HHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHCCCCCCEEEEEECCCCC ETPSGDSPNTSPLPDKD CCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA