Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081615

Identifier: 99081615

GI number: 99081615

Start: 1867202

End: 1868335

Strand: Direct

Name: 99081615

Synonym: TM1040_1774

Alternate gene names: NA

Gene position: 1867202-1868335 (Clockwise)

Preceding gene: 99081614

Following gene: 99081616

Centisome position: 58.33

GC content: 60.14

Gene sequence:

>1134_bases
ATGCGCACGCTGGCCGTATTGACAGTTCGCAATGAGGGGGCCTTTCTGCTCGAATGGCTGGCGCACCACAAGGCAGTAGG
ATTTACGGATTTTCTCGTCTTTTCAAACAACTGCGACGACCCCACCGCCGAGATCCTGACCCGTCTCGATGAGATGGGCC
ATCTGGCGCATGTGGAAAATACCGGCCCCTTCGACAAGGGCGGCATCCAGTTCACCGCCATGAAACGCGCAGACAAGCAT
CGCCTCGCCAAACGCGCCGACTGGATCATGGCGCTGGATGTGGATGAGTTCGTGAACATCCACACCGGGCGCGGACAGAT
CTCGGACCTGCTCGAAGCACTGCCAGAGGCGGATGCCATCACGCTGACATGGCGGCTCTTTGGCAACGCGGATCAGGTCC
GCTACGAAGGCGAGCGTGTCACCGATCGCTTCACGCGCGCCGCGCCCGCAGTCATGCATTGGCCTTGGCGCGCGTCGATG
TTCAAAACGCTCTATCGCAATTCAGGCGTGTATCGCAAAATCGGCATCCACCGCCCCCGCAACGTGAAGGATGAAGCCGC
CCGCGACCAATACCGCTGGTTCGACTGCGTCGGACGCGAATTGATGGGCGATTTCAAAACCAAGCGCGTGTTCTCAAACT
ACGGTCAGGACAACTACCAGCTGGCGCAACTCAATCATTATCCGCTCGGCGCAATGGAGAGCTATATTCTCAAGGCCAAC
CGGGGACGCGCGGTGCACTCAGAGGATCTTCTGGATGTCGACTACTGGGTGGAGCGCAACTTCAACACGGACGAGGACAC
CTCGATCAGGCGCTACCGGGCGGCGCGCGATGCGATCCTCGACCTGTTCTTGGCTGACGAGGCTCTGCGCAAACTCCACG
AGCGTGCCGTGCAATGGCGCAAGGACCGCTTCATGGAACTGATGCGCGAAGAACCTTACCGCGCACTCTTTGGCCGACTC
ATGATGACGCCTCCCTCGCGCCCGATCAGCCAGGTCACGGGCCGTACCCTGGCCGGATTTGCCACCCTTGGACACCAAAA
CCAGCGCAGGATCCGCGTCAAGAAGGACACCGTACCGGGTGAAACACCAAGTGGTGACAGCCCGAACACAAGCCCGCTGC
CCGACAAGGACTAG

Upstream 100 bases:

>100_bases
AGGAGGAATTCGAAGCGCTTTATCAGCAGGCGCTGGAGATCGACATCCCCGCAACCGAGCGCGTGGCCTGGGCGCTCTCG
CTGGATCTGGAGAGCTGACC

Downstream 100 bases:

>100_bases
CCCGCTGATCTCGCCCTGCTCTCGGTGGGATTATCGCCAACTGAGCAACAATGGCCGACAATTGGGCCAAGGTTTTTCTA
AATTTAGCCTCAATCTCAGC

Product: glycosyl transferase, group 2 family protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MRTLAVLTVRNEGAFLLEWLAHHKAVGFTDFLVFSNNCDDPTAEILTRLDEMGHLAHVENTGPFDKGGIQFTAMKRADKH
RLAKRADWIMALDVDEFVNIHTGRGQISDLLEALPEADAITLTWRLFGNADQVRYEGERVTDRFTRAAPAVMHWPWRASM
FKTLYRNSGVYRKIGIHRPRNVKDEAARDQYRWFDCVGRELMGDFKTKRVFSNYGQDNYQLAQLNHYPLGAMESYILKAN
RGRAVHSEDLLDVDYWVERNFNTDEDTSIRRYRAARDAILDLFLADEALRKLHERAVQWRKDRFMELMREEPYRALFGRL
MMTPPSRPISQVTGRTLAGFATLGHQNQRRIRVKKDTVPGETPSGDSPNTSPLPDKD

Sequences:

>Translated_377_residues
MRTLAVLTVRNEGAFLLEWLAHHKAVGFTDFLVFSNNCDDPTAEILTRLDEMGHLAHVENTGPFDKGGIQFTAMKRADKH
RLAKRADWIMALDVDEFVNIHTGRGQISDLLEALPEADAITLTWRLFGNADQVRYEGERVTDRFTRAAPAVMHWPWRASM
FKTLYRNSGVYRKIGIHRPRNVKDEAARDQYRWFDCVGRELMGDFKTKRVFSNYGQDNYQLAQLNHYPLGAMESYILKAN
RGRAVHSEDLLDVDYWVERNFNTDEDTSIRRYRAARDAILDLFLADEALRKLHERAVQWRKDRFMELMREEPYRALFGRL
MMTPPSRPISQVTGRTLAGFATLGHQNQRRIRVKKDTVPGETPSGDSPNTSPLPDKD
>Mature_377_residues
MRTLAVLTVRNEGAFLLEWLAHHKAVGFTDFLVFSNNCDDPTAEILTRLDEMGHLAHVENTGPFDKGGIQFTAMKRADKH
RLAKRADWIMALDVDEFVNIHTGRGQISDLLEALPEADAITLTWRLFGNADQVRYEGERVTDRFTRAAPAVMHWPWRASM
FKTLYRNSGVYRKIGIHRPRNVKDEAARDQYRWFDCVGRELMGDFKTKRVFSNYGQDNYQLAQLNHYPLGAMESYILKAN
RGRAVHSEDLLDVDYWVERNFNTDEDTSIRRYRAARDAILDLFLADEALRKLHERAVQWRKDRFMELMREEPYRALFGRL
MMTPPSRPISQVTGRTLAGFATLGHQNQRRIRVKKDTVPGETPSGDSPNTSPLPDKD

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43574; Mature: 43574

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLAVLTVRNEGAFLLEWLAHHKAVGFTDFLVFSNNCDDPTAEILTRLDEMGHLAHVEN
CCEEEEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCEEEECC
TGPFDKGGIQFTAMKRADKHRLAKRADWIMALDVDEFVNIHTGRGQISDLLEALPEADAI
CCCCCCCCEEEEEHHHHHHHHHHHHCCEEEEEEHHHHHEECCCCCHHHHHHHHCCCCCEE
TLTWRLFGNADQVRYEGERVTDRFTRAAPAVMHWPWRASMFKTLYRNSGVYRKIGIHRPR
EEEEEEECCCCCEEECCHHHHHHHHHHCCHHEECCHHHHHHHHHHHCCCCEEEECCCCCC
NVKDEAARDQYRWFDCVGRELMGDFKTKRVFSNYGQDNYQLAQLNHYPLGAMESYILKAN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCC
RGRAVHSEDLLDVDYWVERNFNTDEDTSIRRYRAARDAILDLFLADEALRKLHERAVQWR
CCCEECCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KDRFMELMREEPYRALFGRLMMTPPSRPISQVTGRTLAGFATLGHQNQRRIRVKKDTVPG
HHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHCCCCCCEEEEEECCCCC
ETPSGDSPNTSPLPDKD
CCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRTLAVLTVRNEGAFLLEWLAHHKAVGFTDFLVFSNNCDDPTAEILTRLDEMGHLAHVEN
CCEEEEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCEEEECC
TGPFDKGGIQFTAMKRADKHRLAKRADWIMALDVDEFVNIHTGRGQISDLLEALPEADAI
CCCCCCCCEEEEEHHHHHHHHHHHHCCEEEEEEHHHHHEECCCCCHHHHHHHHCCCCCEE
TLTWRLFGNADQVRYEGERVTDRFTRAAPAVMHWPWRASMFKTLYRNSGVYRKIGIHRPR
EEEEEEECCCCCEEECCHHHHHHHHHHCCHHEECCHHHHHHHHHHHCCCCEEEECCCCCC
NVKDEAARDQYRWFDCVGRELMGDFKTKRVFSNYGQDNYQLAQLNHYPLGAMESYILKAN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCC
RGRAVHSEDLLDVDYWVERNFNTDEDTSIRRYRAARDAILDLFLADEALRKLHERAVQWR
CCCEECCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KDRFMELMREEPYRALFGRLMMTPPSRPISQVTGRTLAGFATLGHQNQRRIRVKKDTVPG
HHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHCCCCCCEEEEEECCCCC
ETPSGDSPNTSPLPDKD
CCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA