| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081613
Identifier: 99081613
GI number: 99081613
Start: 1864177
End: 1864836
Strand: Direct
Name: 99081613
Synonym: TM1040_1772
Alternate gene names: NA
Gene position: 1864177-1864836 (Clockwise)
Preceding gene: 99081612
Following gene: 99081614
Centisome position: 58.24
GC content: 61.52
Gene sequence:
>660_bases ATGACTGTGGAGATCATCAATCTGGGACTGCCGAAATCCGGCACCACGACGCTCAAGGACGCGTTGACCCGCGCGGGGTA TTCCGTGGCCGATCACCGGATAAAATCCGAAGAAGACCCCGACGACCCCGATGACCGGGTCTTTGTCGGTGATCTGATGT ATCAGGGGCTCTATAAGTACGGCGATCCGCTGGCGCTGCTCAACACGCATGATGCGCTCACCGAGGTGAGCTTTATCTAC GGGGGCAATTCGGTCTGGCCGCAATGCGACCACGCAATGCTGCTGGCGCTGCGCAAGCTGCACCCGAGACTGTGTTTTGT GGCCACACGGCGCGACACCGAACAGATGGCGCATTCGATCATGCGCTGGAACAACCTGGGCAAGCTGCGGCTCCCGCTCT CGACGGTTCCGGGCCTGCCGGTGGGATACGGGCACGAAATCGACGAGCAGATGATCTGGATCGACGGCCACTACGAGGCG CTGGCGCATTGGTTTCGCAATGACCCGCTGTACCTTGAACTCGATGTCGCCGCGCCTGATGCGCAGTACAAGCTGGCGCG TTTTCTGGGCCGCCCCCTGCCATGGTGGGGACAATCCAATATCAATCCAGAAGGGCCCTCTGCGCGCGGGCGCGGCAGAC GACAGGACGAGGCAGGCTGA
Upstream 100 bases:
>100_bases GCGTATCAGGCGATGCGCGCCCAGCTGCAAAAAGCCTCTCCGCTGCCGCCGCAAGAAGAAGCGATGTTGATGCGGCTGGG TCTGATGTGAGGCGGAGGCG
Downstream 100 bases:
>100_bases TGCGGATCTATCTTCATATCGGGCTGCACCGCGCAGGATCGGAACGGATACAGGCGGTGTTGGCCGACAAGCGCGACCAG CTGCGCGCACGCGGAATTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 219; Mature: 218
Protein sequence:
>219_residues MTVEIINLGLPKSGTTTLKDALTRAGYSVADHRIKSEEDPDDPDDRVFVGDLMYQGLYKYGDPLALLNTHDALTEVSFIY GGNSVWPQCDHAMLLALRKLHPRLCFVATRRDTEQMAHSIMRWNNLGKLRLPLSTVPGLPVGYGHEIDEQMIWIDGHYEA LAHWFRNDPLYLELDVAAPDAQYKLARFLGRPLPWWGQSNINPEGPSARGRGRRQDEAG
Sequences:
>Translated_219_residues MTVEIINLGLPKSGTTTLKDALTRAGYSVADHRIKSEEDPDDPDDRVFVGDLMYQGLYKYGDPLALLNTHDALTEVSFIY GGNSVWPQCDHAMLLALRKLHPRLCFVATRRDTEQMAHSIMRWNNLGKLRLPLSTVPGLPVGYGHEIDEQMIWIDGHYEA LAHWFRNDPLYLELDVAAPDAQYKLARFLGRPLPWWGQSNINPEGPSARGRGRRQDEAG >Mature_218_residues TVEIINLGLPKSGTTTLKDALTRAGYSVADHRIKSEEDPDDPDDRVFVGDLMYQGLYKYGDPLALLNTHDALTEVSFIYG GNSVWPQCDHAMLLALRKLHPRLCFVATRRDTEQMAHSIMRWNNLGKLRLPLSTVPGLPVGYGHEIDEQMIWIDGHYEAL AHWFRNDPLYLELDVAAPDAQYKLARFLGRPLPWWGQSNINPEGPSARGRGRRQDEAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24737; Mature: 24606
Theoretical pI: Translated: 6.08; Mature: 6.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVEIINLGLPKSGTTTLKDALTRAGYSVADHRIKSEEDPDDPDDRVFVGDLMYQGLYKY CEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHH GDPLALLNTHDALTEVSFIYGGNSVWPQCDHAMLLALRKLHPRLCFVATRRDTEQMAHSI CCCEEEEECCHHHHHEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH MRWNNLGKLRLPLSTVPGLPVGYGHEIDEQMIWIDGHYEALAHWFRNDPLYLELDVAAPD HHHCCCCEEEECHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCEEEEEEECCCC AQYKLARFLGRPLPWWGQSNINPEGPSARGRGRRQDEAG HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TVEIINLGLPKSGTTTLKDALTRAGYSVADHRIKSEEDPDDPDDRVFVGDLMYQGLYKY EEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHH GDPLALLNTHDALTEVSFIYGGNSVWPQCDHAMLLALRKLHPRLCFVATRRDTEQMAHSI CCCEEEEECCHHHHHEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH MRWNNLGKLRLPLSTVPGLPVGYGHEIDEQMIWIDGHYEALAHWFRNDPLYLELDVAAPD HHHCCCCEEEECHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCEEEEEEECCCC AQYKLARFLGRPLPWWGQSNINPEGPSARGRGRRQDEAG HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA