| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is cutL [H]
Identifier: 99081606
GI number: 99081606
Start: 1855343
End: 1857721
Strand: Reverse
Name: cutL [H]
Synonym: TM1040_1765
Alternate gene names: 99081606
Gene position: 1857721-1855343 (Counterclockwise)
Preceding gene: 99081607
Following gene: 99081605
Centisome position: 58.04
GC content: 60.87
Gene sequence:
>2379_bases ATGCCTAAGGATATTGAAGCCAAGGAAAGCGGCATAGGGGCCGCCACCAAACGGCGCGAAGACGTAAGGTTCCTGACGGG AACCGGGAATTATGCTGACGACATCAATGTAAACGGTCAGGCCTATGTGCATTTCCTGCGCTCGGATGTGGCGCATGGGC GGATCACCTCGCTTGAGACTGCCGCAGCGGCGGCGATGCCGGGCGTGCTGCGGGTGTTCACCGGGGCAGATTTCGAAGGC GTCGGAGGACTGCCCTGCGGCTGGCAGGTGACGGATCGCTTTGGTGAGGTGATGCAGGAACCTGCCCACCCGGTGCTGGC GCAGGGCAAGGTGCGCCATGTGGGTGATCCGATCGCCGCGGTGGTGGCCGAGAGCGCCGAATTGGCTCGCGATGCCGCCG AGGCGATCGAACTGGAGATCGAAGAGCTTCCGGCAGTGATCGACATGAAGGCCGCTCTTGCTGAGGAGGCCCCGAAGGTA CATGACGATCTGACGTCAAACCTCTGTTATGATTGGGGCTTTGTCGAAGAGAACAAGGATGCGGTGGCCAAGGCCTTTGA TGAGGCCGCCCATGTAACCACGCTCGAGTTGGTCAACAATCGTTTGGTCGCCAACCCGATGGAGCCGCGCGTGGCGGTGG GCGATTTCAACCGCGCTACCGGCGAAAGCACGCTTTATACTACAAGCCAGAACCCGCATGTGATCCGGCTCCTGATGGGC GCCTTTGTGCTCGGCATTCCGGAGCATAAATTGCGCGTGGTGGCCCCGGATGTGGGGGGCGGTTTTGGCTCCAAGATCTT CCACTACGCCGAAGAAGCGTTTTGCACCTTTGCCGCCAAGGCGCTCAACCGCGCGGTGAAATGGACCTCCTCGCGGTCCG AGGCCTTCATGTCTGATGCCCATGGCCGCGATCATGTGACCAAGATCGAACTGGCGCTGGACGCAGACAACAACTTCACC GCTCTGCGCACCGAAACTTACGCCAATATGGGGGCGTATCTCTCGACCTTCGCGCCCTCGGTGCCGACCTGGCTGCATGG CACGCTGATGGCGGGCAACTACAAGACGCCGCTCATTTATGTGAACGTCAAGGCGGTCTTTACCAATACGGTGCCAGTCG ATGCCTATCGCGGCGCTGGGCGTCCCGAGGCGACCTTCCAGTTGGAGCGCGTCATCGACAAGGCCGCGCGCGAGCTGGAT GTCGACCCGGTCGCGCTCCGGCGGCAGAACTTTGTCACCGAGTTCCCCTATGCCACGCCTGTGGCGGTGGAATATGACAC CGGCGACTATGTGGCGACGATGGATAAGCTTGAAGAGATTGCGGATATCGCAGGCTTTGCCGCGCGCCGCGCCGAGAGCG AGAAAAGCGGCAAACTGCGTGGTCTGGGTGTCAACTGCTATATCGAAGCCTGTGGTATCGCGCCCTCGAACCTCGTGGGT CAACTTGGTGCGCGCGCAGGGCTCTATGAGAGTGCGACGGTACGCGTCAATGCAACTGGCGGTATCGTGGTGATGACCGG CAGTCACAGCCATGGGCAAGGGCATGAGACGTCCTTTCCGCAGGTGATCGCCGAGATGATCGGCATCCCCGAGGATATGG TGGAGATCGAGCACGGCGACACCAACAACGCGCCGATGGGCATGGGCACCTATGGCTCGCGTTCCTTGGCGGTGGGCGGC TCTGCCATGGTGCGCGCGACCGAAAAGATCATCAGCAAGGCCAAGAAGATCGCGGCGCATCTGATGGAGGCTTCGGACGC CGATATTGAGCTTAAGGACGGGAGGTTCTCGGTGGCAGGCACGGATAAATCCGTGGCCTGGGGCGATGTGACCTTGGCGG CTTATGTGCCACATAACTACCCGCTCGAAGAGATCGAACCGGGGCTGGAGGAGACGGCGTTCTATGATCCGGCGAACTTT ACCTACCCGGCTGGCGCTTATGCCTGTGAGGTCGAAGTGGATCCCGAGACTGGCAAAGTCACCATCGAGCGCTTTGCCGC TGCCGATGACTTTGGCAATATCGTTAACCCGATGATTGTGGACGGTCAGGTCCACGGCGGAATTGGACAGGGCATTGGGC AGGCGCTTCTGGAGGGCTGTGTTTATGACGAGGATGGTCAGCTCTTGTCCGCGAGCTTCATGGATTACGCCATGCCGCGC GCGGATGATGTGCCGTTTTATCAGGTGGATCATTCCTGCCAGACCCCCTGCACGCATAACCCTCTTGGGGTGAAAGGCTG CGGAGAGGCAGGGGCAATTGGATCTCCGCCAGCGGTGGTCAATGCGGTGGTGGATGCGCTGCGCTCTGCCGGGAAGGATG TCACCCACATCGACATGCCGCTGACGCCGGCGCGGGTCTGGGCGGCGATGCAAGGTTGA
Upstream 100 bases:
>100_bases ATCCAGCGGATCAGTTCTGGTCTGGCTGCGGCGGGAAGAGGAGCCCGACGCGCCGCATGACCAGAAAGCCCGGTTCGCAA TTCTGGGAGGAGTGTGGATT
Downstream 100 bases:
>100_bases GATGGCGGAGCGGGGGCCAGCCCCCGCACCCCCGGGATATTTATGAGAAGATGAAGGAGCCCAAGGGCGATCCTTCGGAA AGGAAGAGCGATGTATGAGT
Product: xanthine dehydrogenase, molybdenum binding subunit apoprotein
Products: NA
Alternate protein names: CO dehydrogenase subunit L; CO-DH L [H]
Number of amino acids: Translated: 792; Mature: 791
Protein sequence:
>792_residues MPKDIEAKESGIGAATKRREDVRFLTGTGNYADDINVNGQAYVHFLRSDVAHGRITSLETAAAAAMPGVLRVFTGADFEG VGGLPCGWQVTDRFGEVMQEPAHPVLAQGKVRHVGDPIAAVVAESAELARDAAEAIELEIEELPAVIDMKAALAEEAPKV HDDLTSNLCYDWGFVEENKDAVAKAFDEAAHVTTLELVNNRLVANPMEPRVAVGDFNRATGESTLYTTSQNPHVIRLLMG AFVLGIPEHKLRVVAPDVGGGFGSKIFHYAEEAFCTFAAKALNRAVKWTSSRSEAFMSDAHGRDHVTKIELALDADNNFT ALRTETYANMGAYLSTFAPSVPTWLHGTLMAGNYKTPLIYVNVKAVFTNTVPVDAYRGAGRPEATFQLERVIDKAARELD VDPVALRRQNFVTEFPYATPVAVEYDTGDYVATMDKLEEIADIAGFAARRAESEKSGKLRGLGVNCYIEACGIAPSNLVG QLGARAGLYESATVRVNATGGIVVMTGSHSHGQGHETSFPQVIAEMIGIPEDMVEIEHGDTNNAPMGMGTYGSRSLAVGG SAMVRATEKIISKAKKIAAHLMEASDADIELKDGRFSVAGTDKSVAWGDVTLAAYVPHNYPLEEIEPGLEETAFYDPANF TYPAGAYACEVEVDPETGKVTIERFAAADDFGNIVNPMIVDGQVHGGIGQGIGQALLEGCVYDEDGQLLSASFMDYAMPR ADDVPFYQVDHSCQTPCTHNPLGVKGCGEAGAIGSPPAVVNAVVDALRSAGKDVTHIDMPLTPARVWAAMQG
Sequences:
>Translated_792_residues MPKDIEAKESGIGAATKRREDVRFLTGTGNYADDINVNGQAYVHFLRSDVAHGRITSLETAAAAAMPGVLRVFTGADFEG VGGLPCGWQVTDRFGEVMQEPAHPVLAQGKVRHVGDPIAAVVAESAELARDAAEAIELEIEELPAVIDMKAALAEEAPKV HDDLTSNLCYDWGFVEENKDAVAKAFDEAAHVTTLELVNNRLVANPMEPRVAVGDFNRATGESTLYTTSQNPHVIRLLMG AFVLGIPEHKLRVVAPDVGGGFGSKIFHYAEEAFCTFAAKALNRAVKWTSSRSEAFMSDAHGRDHVTKIELALDADNNFT ALRTETYANMGAYLSTFAPSVPTWLHGTLMAGNYKTPLIYVNVKAVFTNTVPVDAYRGAGRPEATFQLERVIDKAARELD VDPVALRRQNFVTEFPYATPVAVEYDTGDYVATMDKLEEIADIAGFAARRAESEKSGKLRGLGVNCYIEACGIAPSNLVG QLGARAGLYESATVRVNATGGIVVMTGSHSHGQGHETSFPQVIAEMIGIPEDMVEIEHGDTNNAPMGMGTYGSRSLAVGG SAMVRATEKIISKAKKIAAHLMEASDADIELKDGRFSVAGTDKSVAWGDVTLAAYVPHNYPLEEIEPGLEETAFYDPANF TYPAGAYACEVEVDPETGKVTIERFAAADDFGNIVNPMIVDGQVHGGIGQGIGQALLEGCVYDEDGQLLSASFMDYAMPR ADDVPFYQVDHSCQTPCTHNPLGVKGCGEAGAIGSPPAVVNAVVDALRSAGKDVTHIDMPLTPARVWAAMQG >Mature_791_residues PKDIEAKESGIGAATKRREDVRFLTGTGNYADDINVNGQAYVHFLRSDVAHGRITSLETAAAAAMPGVLRVFTGADFEGV GGLPCGWQVTDRFGEVMQEPAHPVLAQGKVRHVGDPIAAVVAESAELARDAAEAIELEIEELPAVIDMKAALAEEAPKVH DDLTSNLCYDWGFVEENKDAVAKAFDEAAHVTTLELVNNRLVANPMEPRVAVGDFNRATGESTLYTTSQNPHVIRLLMGA FVLGIPEHKLRVVAPDVGGGFGSKIFHYAEEAFCTFAAKALNRAVKWTSSRSEAFMSDAHGRDHVTKIELALDADNNFTA LRTETYANMGAYLSTFAPSVPTWLHGTLMAGNYKTPLIYVNVKAVFTNTVPVDAYRGAGRPEATFQLERVIDKAARELDV DPVALRRQNFVTEFPYATPVAVEYDTGDYVATMDKLEEIADIAGFAARRAESEKSGKLRGLGVNCYIEACGIAPSNLVGQ LGARAGLYESATVRVNATGGIVVMTGSHSHGQGHETSFPQVIAEMIGIPEDMVEIEHGDTNNAPMGMGTYGSRSLAVGGS AMVRATEKIISKAKKIAAHLMEASDADIELKDGRFSVAGTDKSVAWGDVTLAAYVPHNYPLEEIEPGLEETAFYDPANFT YPAGAYACEVEVDPETGKVTIERFAAADDFGNIVNPMIVDGQVHGGIGQGIGQALLEGCVYDEDGQLLSASFMDYAMPRA DDVPFYQVDHSCQTPCTHNPLGVKGCGEAGAIGSPPAVVNAVVDALRSAGKDVTHIDMPLTPARVWAAMQG
Specific function: Catalyzes the oxidation of carbon monoxide to carbon dioxide [H]
COG id: COG1529
COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI71773480, Length=797, Percent_Identity=25.0941028858218, Blast_Score=153, Evalue=6e-37, Organism=Homo sapiens, GI91823271, Length=804, Percent_Identity=24.0049751243781, Blast_Score=144, Evalue=4e-34, Organism=Escherichia coli, GI1789230, Length=796, Percent_Identity=29.1457286432161, Blast_Score=249, Evalue=5e-67, Organism=Escherichia coli, GI1789246, Length=811, Percent_Identity=25.6473489519112, Blast_Score=205, Evalue=1e-53, Organism=Escherichia coli, GI1786478, Length=758, Percent_Identity=26.7810026385224, Blast_Score=122, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17540638, Length=814, Percent_Identity=23.5872235872236, Blast_Score=150, Evalue=2e-36, Organism=Caenorhabditis elegans, GI17539860, Length=765, Percent_Identity=25.2287581699346, Blast_Score=143, Evalue=3e-34, Organism=Caenorhabditis elegans, GI32566215, Length=540, Percent_Identity=25.1851851851852, Blast_Score=110, Evalue=4e-24, Organism=Drosophila melanogaster, GI17737937, Length=804, Percent_Identity=24.7512437810945, Blast_Score=140, Evalue=4e-33, Organism=Drosophila melanogaster, GI24647193, Length=801, Percent_Identity=23.9700374531835, Blast_Score=115, Evalue=9e-26, Organism=Drosophila melanogaster, GI24647201, Length=796, Percent_Identity=22.7386934673367, Blast_Score=104, Evalue=2e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000674 - InterPro: IPR008274 - InterPro: IPR012780 [H]
Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]
EC number: =1.2.99.2 [H]
Molecular weight: Translated: 84634; Mature: 84503
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: PS00107 PROTEIN_KINASE_ATP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKDIEAKESGIGAATKRREDVRFLTGTGNYADDINVNGQAYVHFLRSDVAHGRITSLET CCCCCCCHHCCCCCHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHH AAAAAMPGVLRVFTGADFEGVGGLPCGWQVTDRFGEVMQEPAHPVLAQGKVRHVGDPIAA HHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCCHHHCCCHHHH VVAESAELARDAAEAIELEIEELPAVIDMKAALAEEAPKVHDDLTSNLCYDWGFVEENKD HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCEECCCCCCCCHH AVAKAFDEAAHVTTLELVNNRLVANPMEPRVAVGDFNRATGESTLYTTSQNPHVIRLLMG HHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCCCCCCCCCEEEECCCCCHHHHHHHH AFVLGIPEHKLRVVAPDVGGGFGSKIFHYAEEAFCTFAAKALNRAVKWTSSRSEAFMSDA HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC HGRDHVTKIELALDADNNFTALRTETYANMGAYLSTFAPSVPTWLHGTLMAGNYKTPLIY CCCCCEEEEEEEEECCCCEEEEEEHHHHHHHHHHHHHCCCCCCHHCCEEEECCCCCCEEE VNVKAVFTNTVPVDAYRGAGRPEATFQLERVIDKAARELDVDPVALRRQNFVTEFPYATP EEEEEEEECCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHCCCCCCC VAVEYDTGDYVATMDKLEEIADIAGFAARRAESEKSGKLRGLGVNCYIEACGIAPSNLVG EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCCHHHHHH QLGARAGLYESATVRVNATGGIVVMTGSHSHGQGHETSFPQVIAEMIGIPEDMVEIEHGD HHHCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHEEEECCC TNNAPMGMGTYGSRSLAVGGSAMVRATEKIISKAKKIAAHLMEASDADIELKDGRFSVAG CCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEC TDKSVAWGDVTLAAYVPHNYPLEEIEPGLEETAFYDPANFTYPAGAYACEVEVDPETGKV CCCCEEECCEEEEEECCCCCCHHHHCCCHHHHCEECCCCCCCCCCCEEEEEEECCCCCCE TIERFAAADDFGNIVNPMIVDGQVHGGIGQGIGQALLEGCVYDEDGQLLSASFMDYAMPR EEEHHHHHHHHHHCCCCEEECCEECCCHHHHHHHHHHHCCEECCCCCEEHHHHHHHHCCC ADDVPFYQVDHSCQTPCTHNPLGVKGCGEAGAIGSPPAVVNAVVDALRSAGKDVTHIDMP CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCC LTPARVWAAMQG CCHHHHHHCCCC >Mature Secondary Structure PKDIEAKESGIGAATKRREDVRFLTGTGNYADDINVNGQAYVHFLRSDVAHGRITSLET CCCCCCHHCCCCCHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHH AAAAAMPGVLRVFTGADFEGVGGLPCGWQVTDRFGEVMQEPAHPVLAQGKVRHVGDPIAA HHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCCHHHCCCHHHH VVAESAELARDAAEAIELEIEELPAVIDMKAALAEEAPKVHDDLTSNLCYDWGFVEENKD HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCEECCCCCCCCHH AVAKAFDEAAHVTTLELVNNRLVANPMEPRVAVGDFNRATGESTLYTTSQNPHVIRLLMG HHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCCCCCCCCCEEEECCCCCHHHHHHHH AFVLGIPEHKLRVVAPDVGGGFGSKIFHYAEEAFCTFAAKALNRAVKWTSSRSEAFMSDA HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC HGRDHVTKIELALDADNNFTALRTETYANMGAYLSTFAPSVPTWLHGTLMAGNYKTPLIY CCCCCEEEEEEEEECCCCEEEEEEHHHHHHHHHHHHHCCCCCCHHCCEEEECCCCCCEEE VNVKAVFTNTVPVDAYRGAGRPEATFQLERVIDKAARELDVDPVALRRQNFVTEFPYATP EEEEEEEECCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHCCCCCCC VAVEYDTGDYVATMDKLEEIADIAGFAARRAESEKSGKLRGLGVNCYIEACGIAPSNLVG EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCCHHHHHH QLGARAGLYESATVRVNATGGIVVMTGSHSHGQGHETSFPQVIAEMIGIPEDMVEIEHGD HHHCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHEEEECCC TNNAPMGMGTYGSRSLAVGGSAMVRATEKIISKAKKIAAHLMEASDADIELKDGRFSVAG CCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEC TDKSVAWGDVTLAAYVPHNYPLEEIEPGLEETAFYDPANFTYPAGAYACEVEVDPETGKV CCCCEEECCEEEEEECCCCCCHHHHCCCHHHHCEECCCCCCCCCCCEEEEEEECCCCCCE TIERFAAADDFGNIVNPMIVDGQVHGGIGQGIGQALLEGCVYDEDGQLLSASFMDYAMPR EEEHHHHHHHHHHCCCCEEECCEECCCHHHHHHHHHHHCCEECCCCCEEHHHHHHHHCCC ADDVPFYQVDHSCQTPCTHNPLGVKGCGEAGAIGSPPAVVNAVVDALRSAGKDVTHIDMP CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCC LTPARVWAAMQG CCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10482497; 2818128; 10966817; 11076018 [H]