| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081545
Identifier: 99081545
GI number: 99081545
Start: 1799623
End: 1800708
Strand: Reverse
Name: 99081545
Synonym: TM1040_1704
Alternate gene names: NA
Gene position: 1800708-1799623 (Counterclockwise)
Preceding gene: 99081546
Following gene: 99081543
Centisome position: 56.26
GC content: 61.69
Gene sequence:
>1086_bases ATGTTTCTCAAGCGGCTGAGTAAATCAGTTCTGGGAGTGTTCGGGCGGCGTCGGCTGCTGTCCGCGCACTCGTCAGAGAC CGCTTCGCGCGGTCCGCAATCTCATGTGATCATCCTTGACGGCACTATGTCGACACTCGAACCGGGGCGTGAAACCCATG CGGGAATGGCCTATCGGCTCTGCAAGGAAATGGGGCCGCGGGTCTCTGTTTATTACGAGGCTGGCGTGCAGTGGAACGCC TGGAGCAAGACCGCCGATGTGATGGTTGGGCGCGGCATCAACCGCAAGATCCGCAGCGCCTATGGCTATCTCGCCTCGCG CTATCGCCCCGGCGACAAGATCTATCTTCTGGGCTACTCGCGCGGCGCCTACGCGGCGCGTTCCCTTGCCGGCATGCTCG GCGCAGTTGGGCTGGTGAAAACAGAACACGCCACCGTGCGCCACATCCGCACCGCCTATCGCCACTACCAGATGGGAAGC GGCCATGAGGTACGACAAGCCTTTCGCAACGCTCATTGCCACCCGGAGATCCAGATTGAGATGGTCGGAGCCTGGGATAC CGTGAAGGCGCTGGGCATTCGCCTACCGATCCTGTGGCGCTGGTCGCAAGTGCAACACGCGTTCCATGATCAGAAACTGG GGGATCACGTCCGGGCGGGCTATCACGCGTTGGCCATGGACGAGACGCGCGAAGCCTATGCACCGGTGCTGTGGCAAACC TCGCCAGACTATTCAGGCCAGCTTGAGCAGGTCTGGTTTCGGGGCTCTCATGGCGATGTTGGCGGTCAGATTGGCGAATG TGACGCCGCCCGCCCGCTGGCCAACCTGTCGTTGGTCTGGATGCTGGAACGCGCAGAGATGTCGGGCCTGCCGCTGCCGC GGGACTGGCGGATGCGTTTTCCGGTGGATCCCGATGCACCTTCGGTGGGCACATGGTCGGGCTGGGGCAAGATCTTTCTG ATCCGTAGCCGACGCAAGATCGGTCTCGACCCGAGTGAGCGCGTGCATCCCAGTGTTCAGATAGCAAAAAAGCCCAACAA GACAGCCGGGTGGCTCGGTATCTTTATGCGCCAAACCCGCCTCTAG
Upstream 100 bases:
>100_bases GCAGCAGTGGCCAATGCGGTTCAGGATGCGCTCTGGGATCAGGGCATCCGGCAGGTGGATATGCCGTTCACGCCGGTCAA ACTTTGGGAGTTGATGAGGG
Downstream 100 bases:
>100_bases GCGCCGCAGTGCAGGCCTGTTCTAGAGCTGTACTGGCCGGAGCGTTTTGACCATTTCTGTCGCCGTTGAGAACCCAAAAA GCGGCGCCAGAATACCAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 361; Mature: 361
Protein sequence:
>361_residues MFLKRLSKSVLGVFGRRRLLSAHSSETASRGPQSHVIILDGTMSTLEPGRETHAGMAYRLCKEMGPRVSVYYEAGVQWNA WSKTADVMVGRGINRKIRSAYGYLASRYRPGDKIYLLGYSRGAYAARSLAGMLGAVGLVKTEHATVRHIRTAYRHYQMGS GHEVRQAFRNAHCHPEIQIEMVGAWDTVKALGIRLPILWRWSQVQHAFHDQKLGDHVRAGYHALAMDETREAYAPVLWQT SPDYSGQLEQVWFRGSHGDVGGQIGECDAARPLANLSLVWMLERAEMSGLPLPRDWRMRFPVDPDAPSVGTWSGWGKIFL IRSRRKIGLDPSERVHPSVQIAKKPNKTAGWLGIFMRQTRL
Sequences:
>Translated_361_residues MFLKRLSKSVLGVFGRRRLLSAHSSETASRGPQSHVIILDGTMSTLEPGRETHAGMAYRLCKEMGPRVSVYYEAGVQWNA WSKTADVMVGRGINRKIRSAYGYLASRYRPGDKIYLLGYSRGAYAARSLAGMLGAVGLVKTEHATVRHIRTAYRHYQMGS GHEVRQAFRNAHCHPEIQIEMVGAWDTVKALGIRLPILWRWSQVQHAFHDQKLGDHVRAGYHALAMDETREAYAPVLWQT SPDYSGQLEQVWFRGSHGDVGGQIGECDAARPLANLSLVWMLERAEMSGLPLPRDWRMRFPVDPDAPSVGTWSGWGKIFL IRSRRKIGLDPSERVHPSVQIAKKPNKTAGWLGIFMRQTRL >Mature_361_residues MFLKRLSKSVLGVFGRRRLLSAHSSETASRGPQSHVIILDGTMSTLEPGRETHAGMAYRLCKEMGPRVSVYYEAGVQWNA WSKTADVMVGRGINRKIRSAYGYLASRYRPGDKIYLLGYSRGAYAARSLAGMLGAVGLVKTEHATVRHIRTAYRHYQMGS GHEVRQAFRNAHCHPEIQIEMVGAWDTVKALGIRLPILWRWSQVQHAFHDQKLGDHVRAGYHALAMDETREAYAPVLWQT SPDYSGQLEQVWFRGSHGDVGGQIGECDAARPLANLSLVWMLERAEMSGLPLPRDWRMRFPVDPDAPSVGTWSGWGKIFL IRSRRKIGLDPSERVHPSVQIAKKPNKTAGWLGIFMRQTRL
Specific function: Unknown
COG id: COG3673
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6320812, Length=235, Percent_Identity=25.531914893617, Blast_Score=76, Evalue=8e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40673; Mature: 40673
Theoretical pI: Translated: 10.57; Mature: 10.57
Prosite motif: PS00120 LIPASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFLKRLSKSVLGVFGRRRLLSAHSSETASRGPQSHVIILDGTMSTLEPGRETHAGMAYRL CCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEECCHHHCCCCCHHHHHHHHHH CKEMGPRVSVYYEAGVQWNAWSKTADVMVGRGINRKIRSAYGYLASRYRPGDKIYLLGYS HHHHCCCEEEEEECCEEECCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEC RGAYAARSLAGMLGAVGLVKTEHATVRHIRTAYRHYQMGSGHEVRQAFRNAHCHPEIQIE CCHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEE MVGAWDTVKALGIRLPILWRWSQVQHAFHDQKLGDHVRAGYHALAMDETREAYAPVLWQT EECCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHCCEEECC SPDYSGQLEQVWFRGSHGDVGGQIGECDAARPLANLSLVWMLERAEMSGLPLPRDWRMRF CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHCEEEEEEEEHHHHCCCCCCCCCCEEC PVDPDAPSVGTWSGWGKIFLIRSRRKIGLDPSERVHPSVQIAKKPNKTAGWLGIFMRQTR CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHCCCCEEEECCCCCCHHHHHHHHHHHC L C >Mature Secondary Structure MFLKRLSKSVLGVFGRRRLLSAHSSETASRGPQSHVIILDGTMSTLEPGRETHAGMAYRL CCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEECCHHHCCCCCHHHHHHHHHH CKEMGPRVSVYYEAGVQWNAWSKTADVMVGRGINRKIRSAYGYLASRYRPGDKIYLLGYS HHHHCCCEEEEEECCEEECCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEC RGAYAARSLAGMLGAVGLVKTEHATVRHIRTAYRHYQMGSGHEVRQAFRNAHCHPEIQIE CCHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEE MVGAWDTVKALGIRLPILWRWSQVQHAFHDQKLGDHVRAGYHALAMDETREAYAPVLWQT EECCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHCCEEECC SPDYSGQLEQVWFRGSHGDVGGQIGECDAARPLANLSLVWMLERAEMSGLPLPRDWRMRF CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHCEEEEEEEEHHHHCCCCCCCCCCEEC PVDPDAPSVGTWSGWGKIFLIRSRRKIGLDPSERVHPSVQIAKKPNKTAGWLGIFMRQTR CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHCCCCEEEECCCCCCHHHHHHHHHHHC L C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA