| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is cutL [H]
Identifier: 99081546
GI number: 99081546
Start: 1800686
End: 1802995
Strand: Reverse
Name: cutL [H]
Synonym: TM1040_1705
Alternate gene names: 99081546
Gene position: 1802995-1800686 (Counterclockwise)
Preceding gene: 99081556
Following gene: 99081545
Centisome position: 56.33
GC content: 61.3
Gene sequence:
>2310_bases ATGAACCAACGGGTCGAAAAATTTGGGAAGAGTCAGCCGCTCGCACGGGTGGAGGACCAGCGTCTGCTGACCGGACAGGG GCGCTACATCGAGGATACCATGCCTGCGGGGGCATTGCGGGCCTATGTGTTTCGCAGCCCCGTCGCGCATGGCGAGATCA CCACGCTCAATGTCGATGATGCGCGCGCAGCCGAAGGCGTGCATCTGGTGATTACGCAGGCCGATCTGGTTGATGCGGGG ATTGAGGCCACGCTTGATGGTGCTTTGGTCAAGAATATTGACGGCAGCAAGGCTGCAGCTCCCGAACGGCCGGTGCTGGC AGGGCACCGCGTGCGCTATGTCGGGGAGCCCGTGGCCGTGGTCATCGCCGACACCATGGATCAGGCGCGTGACGCCGCCG AATTGATCGAGTTTGACTACGAGGATCTCGACGTGAAGCTAGATCTGGCCGCAGGCGGCGCAGAGATTCATCCCGAGGCA CCTCAGAATCGCGCCTTCAACTGGGGGCTTGGCGACAAGGCTGCAACCGATGCGGCCTTTGAAGCTGCCGCTCATACGGT CAGCCTGCAGGTCGACGACAACCGCATCATCGTCAACGCGATGGAGCCACGCGGCTGTCACGCCACCTGGCAGGATGGGC GCATGCATTTTTACTATGGCGGGCAGGGCGTCTGGTCCATGAAGGAGCAGTTGGCCAAGAAAATGCATCTCCCCGCCGAA GATGTACATGTGGTGACGCCGGATGTGGGCGGCGGCTTTGGCATGAAAGCAATGCCCTATCCGGAGTATTTTGCCGTCGC CTATGCAGCCAAGGTGCTGGAGCGGCCCGTGGGCTGGATGTCGGATCGCACCGAAGCCATGCTGAGCGACAATGGCGGGC GGGATCTCACCTCTCTGGCCGAGCTGGCCTTTGACGCGGATCTGAAGATCACGGCTTACCGCGTCCATACGCATTGCAAT CTCGGCGCCTATAACTCTCATTTTGGCCAGCCCATTCAGACCCAGCTGTTTTCTCGGGTGCTGGCAGGGGTTTACGACAT CCAGACCGCGTGGCTCGAAGTGGATGGGATCTATACCAACACCACGCAGGTGGATGCGTATCGCGGGGCGGGGCGGCCCG AGGCGATTTATGTGCTCGAGCGGGTCATCGACCGGGCGGCGCGCGATCTTGGCGTTGATCCGATGGACCTGAGGCGCAGG AACTTCATCGCGCCGCAAAAGTTTCCCTACAAGACCGTCACCGATGAGACCTATGACGTGGGGGATTTCAACCTCGTGCT CGACCGTCTCATCAAAGAATCGGATCTGGCCGGGTTCGAGGCGCGGCGCGCGCAGGACGCGGCAGAAGGTCGTTACCGGG GCGCGGGCCTTTGTTACTATATCGAAAGTATTTTGGGCGATCCTTCAGAGACTGCAGACGTCGAGTTTCTGGAGGACGGC CGGGTGAACATCTATGTGGGTACGCAAAGCAACGGGCAAGGGCATGAAACTGTCTTTGCGACGTTCCTTGCGGACCAGAC CGGCATCCCCGTCAGCGCCATTTCGGTTGTCCAGGGCGACAGTGACCGCATCGCCAAGGGCGGCGGGACCGGCGGCTCTC GTTCCGTGACCACACAGGCCAATGCCACATTGGCCACCGTCGACAAGATGGTGGCCGCCTTCACCCCCTTCCTTGCCGAA GAAATGGGCGTGGATGAGGAGGCTGTCGACTTTGATGGTGAGACCTTCCGCGCGCCGGGGTCCAATCTCACCCCGACGGT GCTTGAGGCGGCTGACCTGGCCCGTGAAAAGGGGCGCGTAGACCTGTTGCGCCATCAGGCCGAAGCATCACTGCCGGGAC GTTCCTTCCCCAACGGGGCCCATCTCGCCGAGGTCGTGATCGACCGTGAAACCGGGCAGGCCCGCGTTGACCGCTATACG GTGGTTGATGATTTTGGAAATCTTATCAACCCCATGCTGGCCGAAGGTCAGGTGCATGGCGGGGTCGCTCAGGGGCTAGG GCAGGCAATGCTTGAACATGTGGTCTACGACGCGGATGGCCAGTTGCTCACGGCAACGTTCATGGACTACGCGATGCCGC GCGCCGAAGATATGCCTTGGGTGGATTTCACCTCGGAGCCGGTGCCATCGACGCAGAACCCGATGGGAATGAAGGGCTGC GGCGAGGCGGGCACGGTTGGGGCCCTCGCAGCAGTGGCCAATGCGGTTCAGGATGCGCTCTGGGATCAGGGCATCCGGCA GGTGGATATGCCGTTCACGCCGGTCAAACTTTGGGAGTTGATGAGGGATGTTTCTCAAGCGGCTGAGTAA
Upstream 100 bases:
>100_bases AGGCAGAAATTTCTTACACCACGGGCGCGGGATCACTGGACAAGCCTGTCGCGCACAGTAGGCTCCGCCCAAGCTGAGCG CAGGCAAAGGGAGCCATCCG
Downstream 100 bases:
>100_bases ATCAGTTCTGGGAGTGTTCGGGCGGCGTCGGCTGCTGTCCGCGCACTCGTCAGAGACCGCTTCGCGCGGTCCGCAATCTC ATGTGATCATCCTTGACGGC
Product: xanthine dehydrogenase, molybdenum binding subunit apoprotein
Products: NA
Alternate protein names: CO dehydrogenase subunit L; CO-DH L [H]
Number of amino acids: Translated: 769; Mature: 769
Protein sequence:
>769_residues MNQRVEKFGKSQPLARVEDQRLLTGQGRYIEDTMPAGALRAYVFRSPVAHGEITTLNVDDARAAEGVHLVITQADLVDAG IEATLDGALVKNIDGSKAAAPERPVLAGHRVRYVGEPVAVVIADTMDQARDAAELIEFDYEDLDVKLDLAAGGAEIHPEA PQNRAFNWGLGDKAATDAAFEAAAHTVSLQVDDNRIIVNAMEPRGCHATWQDGRMHFYYGGQGVWSMKEQLAKKMHLPAE DVHVVTPDVGGGFGMKAMPYPEYFAVAYAAKVLERPVGWMSDRTEAMLSDNGGRDLTSLAELAFDADLKITAYRVHTHCN LGAYNSHFGQPIQTQLFSRVLAGVYDIQTAWLEVDGIYTNTTQVDAYRGAGRPEAIYVLERVIDRAARDLGVDPMDLRRR NFIAPQKFPYKTVTDETYDVGDFNLVLDRLIKESDLAGFEARRAQDAAEGRYRGAGLCYYIESILGDPSETADVEFLEDG RVNIYVGTQSNGQGHETVFATFLADQTGIPVSAISVVQGDSDRIAKGGGTGGSRSVTTQANATLATVDKMVAAFTPFLAE EMGVDEEAVDFDGETFRAPGSNLTPTVLEAADLAREKGRVDLLRHQAEASLPGRSFPNGAHLAEVVIDRETGQARVDRYT VVDDFGNLINPMLAEGQVHGGVAQGLGQAMLEHVVYDADGQLLTATFMDYAMPRAEDMPWVDFTSEPVPSTQNPMGMKGC GEAGTVGALAAVANAVQDALWDQGIRQVDMPFTPVKLWELMRDVSQAAE
Sequences:
>Translated_769_residues MNQRVEKFGKSQPLARVEDQRLLTGQGRYIEDTMPAGALRAYVFRSPVAHGEITTLNVDDARAAEGVHLVITQADLVDAG IEATLDGALVKNIDGSKAAAPERPVLAGHRVRYVGEPVAVVIADTMDQARDAAELIEFDYEDLDVKLDLAAGGAEIHPEA PQNRAFNWGLGDKAATDAAFEAAAHTVSLQVDDNRIIVNAMEPRGCHATWQDGRMHFYYGGQGVWSMKEQLAKKMHLPAE DVHVVTPDVGGGFGMKAMPYPEYFAVAYAAKVLERPVGWMSDRTEAMLSDNGGRDLTSLAELAFDADLKITAYRVHTHCN LGAYNSHFGQPIQTQLFSRVLAGVYDIQTAWLEVDGIYTNTTQVDAYRGAGRPEAIYVLERVIDRAARDLGVDPMDLRRR NFIAPQKFPYKTVTDETYDVGDFNLVLDRLIKESDLAGFEARRAQDAAEGRYRGAGLCYYIESILGDPSETADVEFLEDG RVNIYVGTQSNGQGHETVFATFLADQTGIPVSAISVVQGDSDRIAKGGGTGGSRSVTTQANATLATVDKMVAAFTPFLAE EMGVDEEAVDFDGETFRAPGSNLTPTVLEAADLAREKGRVDLLRHQAEASLPGRSFPNGAHLAEVVIDRETGQARVDRYT VVDDFGNLINPMLAEGQVHGGVAQGLGQAMLEHVVYDADGQLLTATFMDYAMPRAEDMPWVDFTSEPVPSTQNPMGMKGC GEAGTVGALAAVANAVQDALWDQGIRQVDMPFTPVKLWELMRDVSQAAE >Mature_769_residues MNQRVEKFGKSQPLARVEDQRLLTGQGRYIEDTMPAGALRAYVFRSPVAHGEITTLNVDDARAAEGVHLVITQADLVDAG IEATLDGALVKNIDGSKAAAPERPVLAGHRVRYVGEPVAVVIADTMDQARDAAELIEFDYEDLDVKLDLAAGGAEIHPEA PQNRAFNWGLGDKAATDAAFEAAAHTVSLQVDDNRIIVNAMEPRGCHATWQDGRMHFYYGGQGVWSMKEQLAKKMHLPAE DVHVVTPDVGGGFGMKAMPYPEYFAVAYAAKVLERPVGWMSDRTEAMLSDNGGRDLTSLAELAFDADLKITAYRVHTHCN LGAYNSHFGQPIQTQLFSRVLAGVYDIQTAWLEVDGIYTNTTQVDAYRGAGRPEAIYVLERVIDRAARDLGVDPMDLRRR NFIAPQKFPYKTVTDETYDVGDFNLVLDRLIKESDLAGFEARRAQDAAEGRYRGAGLCYYIESILGDPSETADVEFLEDG RVNIYVGTQSNGQGHETVFATFLADQTGIPVSAISVVQGDSDRIAKGGGTGGSRSVTTQANATLATVDKMVAAFTPFLAE EMGVDEEAVDFDGETFRAPGSNLTPTVLEAADLAREKGRVDLLRHQAEASLPGRSFPNGAHLAEVVIDRETGQARVDRYT VVDDFGNLINPMLAEGQVHGGVAQGLGQAMLEHVVYDADGQLLTATFMDYAMPRAEDMPWVDFTSEPVPSTQNPMGMKGC GEAGTVGALAAVANAVQDALWDQGIRQVDMPFTPVKLWELMRDVSQAAE
Specific function: Catalyzes the oxidation of carbon monoxide to carbon dioxide [H]
COG id: COG1529
COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI71773480, Length=787, Percent_Identity=24.0152477763659, Blast_Score=122, Evalue=1e-27, Organism=Homo sapiens, GI91823271, Length=800, Percent_Identity=23.125, Blast_Score=118, Evalue=3e-26, Organism=Escherichia coli, GI1789230, Length=772, Percent_Identity=28.3678756476684, Blast_Score=214, Evalue=1e-56, Organism=Escherichia coli, GI1789246, Length=829, Percent_Identity=24.7285886610374, Blast_Score=196, Evalue=6e-51, Organism=Escherichia coli, GI1786478, Length=780, Percent_Identity=27.4358974358974, Blast_Score=154, Evalue=2e-38, Organism=Caenorhabditis elegans, GI17539860, Length=778, Percent_Identity=22.6221079691517, Blast_Score=125, Evalue=8e-29, Organism=Caenorhabditis elegans, GI32566215, Length=562, Percent_Identity=25.4448398576512, Blast_Score=115, Evalue=9e-26, Organism=Drosophila melanogaster, GI17737937, Length=763, Percent_Identity=24.1153342070773, Blast_Score=117, Evalue=3e-26, Organism=Drosophila melanogaster, GI24647201, Length=687, Percent_Identity=23.72634643377, Blast_Score=94, Evalue=3e-19, Organism=Drosophila melanogaster, GI24647195, Length=783, Percent_Identity=23.3716475095785, Blast_Score=90, Evalue=7e-18, Organism=Drosophila melanogaster, GI24647197, Length=807, Percent_Identity=24.4114002478315, Blast_Score=89, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000674 - InterPro: IPR008274 - InterPro: IPR012780 [H]
Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]
EC number: =1.2.99.2 [H]
Molecular weight: Translated: 83442; Mature: 83442
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQRVEKFGKSQPLARVEDQRLLTGQGRYIEDTMPAGALRAYVFRSPVAHGEITTLNVDD CCCHHHHHCCCCCCHHHCCCEEECCCCCEECCCCCHHHHHHHHHHCCCCCCCEEEEECCC ARAAEGVHLVITQADLVDAGIEATLDGALVKNIDGSKAAAPERPVLAGHRVRYVGEPVAV HHHCCCEEEEEEECHHHHCCCHHHHCCHHHCCCCCCCCCCCCCCCCCCCEEEECCCCEEE VIADTMDQARDAAELIEFDYEDLDVKLDLAAGGAEIHPEAPQNRAFNWGLGDKAATDAAF EEEHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEECCCCCCCCCEECCCCCCHHHHHHH EAAAHTVSLQVDDNRIIVNAMEPRGCHATWQDGRMHFYYGGQGVWSMKEQLAKKMHLPAE HHHEEEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCC DVHVVTPDVGGGFGMKAMPYPEYFAVAYAAKVLERPVGWMSDRTEAMLSDNGGRDLTSLA CCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCHHHHHH ELAFDADLKITAYRVHTHCNLGAYNSHFGQPIQTQLFSRVLAGVYDIQTAWLEVDGIYTN HHHHCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCEEEC TTQVDAYRGAGRPEAIYVLERVIDRAARDLGVDPMDLRRRNFIAPQKFPYKTVTDETYDV CEEEEHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC GDFNLVLDRLIKESDLAGFEARRAQDAAEGRYRGAGLCYYIESILGDPSETADVEFLEDG CHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCC RVNIYVGTQSNGQGHETVFATFLADQTGIPVSAISVVQGDSDRIAKGGGTGGSRSVTTQA EEEEEEECCCCCCCCHHEEEEEHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEECC NATLATVDKMVAAFTPFLAEEMGVDEEAVDFDGETFRAPGSNLTPTVLEAADLAREKGRV CCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCH DLLRHQAEASLPGRSFPNGAHLAEVVIDRETGQARVDRYTVVDDFGNLINPMLAEGQVHG HHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHEEEEHHHHHHHHHHHHHCCCCCC GVAQGLGQAMLEHVVYDADGQLLTATFMDYAMPRAEDMPWVDFTSEPVPSTQNPMGMKGC HHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GEAGTVGALAAVANAVQDALWDQGIRQVDMPFTPVKLWELMRDVSQAAE CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MNQRVEKFGKSQPLARVEDQRLLTGQGRYIEDTMPAGALRAYVFRSPVAHGEITTLNVDD CCCHHHHHCCCCCCHHHCCCEEECCCCCEECCCCCHHHHHHHHHHCCCCCCCEEEEECCC ARAAEGVHLVITQADLVDAGIEATLDGALVKNIDGSKAAAPERPVLAGHRVRYVGEPVAV HHHCCCEEEEEEECHHHHCCCHHHHCCHHHCCCCCCCCCCCCCCCCCCCEEEECCCCEEE VIADTMDQARDAAELIEFDYEDLDVKLDLAAGGAEIHPEAPQNRAFNWGLGDKAATDAAF EEEHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEECCCCCCCCCEECCCCCCHHHHHHH EAAAHTVSLQVDDNRIIVNAMEPRGCHATWQDGRMHFYYGGQGVWSMKEQLAKKMHLPAE HHHEEEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCC DVHVVTPDVGGGFGMKAMPYPEYFAVAYAAKVLERPVGWMSDRTEAMLSDNGGRDLTSLA CCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCHHHHHH ELAFDADLKITAYRVHTHCNLGAYNSHFGQPIQTQLFSRVLAGVYDIQTAWLEVDGIYTN HHHHCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCEEEC TTQVDAYRGAGRPEAIYVLERVIDRAARDLGVDPMDLRRRNFIAPQKFPYKTVTDETYDV CEEEEHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC GDFNLVLDRLIKESDLAGFEARRAQDAAEGRYRGAGLCYYIESILGDPSETADVEFLEDG CHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCC RVNIYVGTQSNGQGHETVFATFLADQTGIPVSAISVVQGDSDRIAKGGGTGGSRSVTTQA EEEEEEECCCCCCCCHHEEEEEHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEECC NATLATVDKMVAAFTPFLAEEMGVDEEAVDFDGETFRAPGSNLTPTVLEAADLAREKGRV CCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCH DLLRHQAEASLPGRSFPNGAHLAEVVIDRETGQARVDRYTVVDDFGNLINPMLAEGQVHG HHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHEEEEHHHHHHHHHHHHHCCCCCC GVAQGLGQAMLEHVVYDADGQLLTATFMDYAMPRAEDMPWVDFTSEPVPSTQNPMGMKGC HHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GEAGTVGALAAVANAVQDALWDQGIRQVDMPFTPVKLWELMRDVSQAAE CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10482497; 2818128; 10966817; 11076018 [H]