| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99081543
Identifier: 99081543
GI number: 99081543
Start: 1797922
End: 1798926
Strand: Reverse
Name: 99081543
Synonym: TM1040_1702
Alternate gene names: NA
Gene position: 1798926-1797922 (Counterclockwise)
Preceding gene: 99081545
Following gene: 99081540
Centisome position: 56.2
GC content: 62.79
Gene sequence:
>1005_bases TTGAAGCCGAGAGTTTTTATTGCCGCGGCGCTCTGTGCTGCATTGCTTGGGGCGTTTGTGTTCTGGCGGCTACTCGATCA CGATCTGGAGCGACGCGCTCAGACAACGTTTGAGTTTCGCACCCTAGAGGGACAGATCGCGGGGACGCTCTGGCTGCCGG ATGAGCCGTTGCGGGCGGCGGTGGTCTTGGTGCATGGCGATGGCGCTCAGGATCGCACAGCGAGCGGCGGATATGCGCCT TTTATCAACGCGCTCCTGGATCGCGGCATCGCGGTTGCGGCCTGGGATAAGCCCGGCATTGGCGCGTCGGAGGGCGACTG GCAACAACAATCGATGCAGGATCGTGCGCTTGAGGTGCGCGTGGCGCTGGCGCAGCTTGAGGCAGCGATCGCGGAGGTGC CCATCGGTGCCCTTGGGTTTTCGCAGGCAGGCTGGGTGCTGCCGAAACTTGAACCGGGGGCTGCGGATTTTCTGGTTTTG GTGGGACCTGCGGTCTCATGGCAGGCGCAAGGCGCCTATCACACGCGGGTCCGCTTTGAACGCGCGGGCTACACGCGCGC GGCGATTGCGCAGGCGCTGGAGGCGTCCGCAGCGCAGGACAAAACCCTGTTTGCCCATGATATTCCCCCGTCGCCGCTGC CAGCGGGGATGACACCCGCGCGCTGGGGCTTTATTCAGGTCAATCGCAACAGCGATGCAAGCGCCGATCTTGCAGCCCTT GAACTGCCCCTGATGGCAATCTGGGGCGCGCAGGATCTGAATGTGGACGCGGTTCGGGACTTTGATCGTTACCGAAGCCT GCGCGCGGCAGCGGCGGCTGAGACCAAATTGCAGCTATGGCCAGAAGCCACCCATGGCTTGCTACGCGCAAAAACATATA ACTATCAGAGCTTTGATGAGTGGTCGTGGTTTGCGCATGCGCGCTTTATGCTCGCGGGACGAGGGGCCTATGCGCCGGGG GCGCTGGACGCGATCGCGGACTGGATCTTGGCTAGATCCTCCTGA
Upstream 100 bases:
>100_bases TACTGGCCTCAATCGAGACTTTTTGGCCCATCTGGTTTGAGTTCGCCATCGTCCCTCCCTAAGTCCAGAGAGATATGGAT TTTTACAAGGTTACATTCAA
Downstream 100 bases:
>100_bases GCTATAGGCCGACGCATCAGGGCGCGACTTTCATCACGATGCAGGTGGTTGATCCTGTTGCATAGAGCTTGCCATCTTCG ACACCACGGATTTCGCCATG
Product: hypothetical protein
Products: NA
Alternate protein names: Alpha/Beta Fold Family Hydrolase; Hydrolase Protein; Hydrolase Of Alpha/Beta Superfamily; Type III Restriction Res Subunit Family; Serine Peptidase Family S; Hydrolase
Number of amino acids: Translated: 334; Mature: 334
Protein sequence:
>334_residues MKPRVFIAAALCAALLGAFVFWRLLDHDLERRAQTTFEFRTLEGQIAGTLWLPDEPLRAAVVLVHGDGAQDRTASGGYAP FINALLDRGIAVAAWDKPGIGASEGDWQQQSMQDRALEVRVALAQLEAAIAEVPIGALGFSQAGWVLPKLEPGAADFLVL VGPAVSWQAQGAYHTRVRFERAGYTRAAIAQALEASAAQDKTLFAHDIPPSPLPAGMTPARWGFIQVNRNSDASADLAAL ELPLMAIWGAQDLNVDAVRDFDRYRSLRAAAAAETKLQLWPEATHGLLRAKTYNYQSFDEWSWFAHARFMLAGRGAYAPG ALDAIADWILARSS
Sequences:
>Translated_334_residues MKPRVFIAAALCAALLGAFVFWRLLDHDLERRAQTTFEFRTLEGQIAGTLWLPDEPLRAAVVLVHGDGAQDRTASGGYAP FINALLDRGIAVAAWDKPGIGASEGDWQQQSMQDRALEVRVALAQLEAAIAEVPIGALGFSQAGWVLPKLEPGAADFLVL VGPAVSWQAQGAYHTRVRFERAGYTRAAIAQALEASAAQDKTLFAHDIPPSPLPAGMTPARWGFIQVNRNSDASADLAAL ELPLMAIWGAQDLNVDAVRDFDRYRSLRAAAAAETKLQLWPEATHGLLRAKTYNYQSFDEWSWFAHARFMLAGRGAYAPG ALDAIADWILARSS >Mature_334_residues MKPRVFIAAALCAALLGAFVFWRLLDHDLERRAQTTFEFRTLEGQIAGTLWLPDEPLRAAVVLVHGDGAQDRTASGGYAP FINALLDRGIAVAAWDKPGIGASEGDWQQQSMQDRALEVRVALAQLEAAIAEVPIGALGFSQAGWVLPKLEPGAADFLVL VGPAVSWQAQGAYHTRVRFERAGYTRAAIAQALEASAAQDKTLFAHDIPPSPLPAGMTPARWGFIQVNRNSDASADLAAL ELPLMAIWGAQDLNVDAVRDFDRYRSLRAAAAAETKLQLWPEATHGLLRAKTYNYQSFDEWSWFAHARFMLAGRGAYAPG ALDAIADWILARSS
Specific function: Unknown
COG id: COG1073
COG function: function code R; Hydrolases of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36277; Mature: 36277
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPRVFIAAALCAALLGAFVFWRLLDHDLERRAQTTFEFRTLEGQIAGTLWLPDEPLRAA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEEEECCCCCCEEE VVLVHGDGAQDRTASGGYAPFINALLDRGIAVAAWDKPGIGASEGDWQQQSMQDRALEVR EEEEECCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH VALAQLEAAIAEVPIGALGFSQAGWVLPKLEPGAADFLVLVGPAVSWQAQGAYHTRVRFE HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCEEEEEEEE RAGYTRAAIAQALEASAAQDKTLFAHDIPPSPLPAGMTPARWGFIQVNRNSDASADLAAL CCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHH ELPLMAIWGAQDLNVDAVRDFDRYRSLRAAAAAETKLQLWPEATHGLLRAKTYNYQSFDE HCCHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHEEEECCCCCCCH WSWFAHARFMLAGRGAYAPGALDAIADWILARSS HHHHHHHEEEEECCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MKPRVFIAAALCAALLGAFVFWRLLDHDLERRAQTTFEFRTLEGQIAGTLWLPDEPLRAA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEEEECCCCCCEEE VVLVHGDGAQDRTASGGYAPFINALLDRGIAVAAWDKPGIGASEGDWQQQSMQDRALEVR EEEEECCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH VALAQLEAAIAEVPIGALGFSQAGWVLPKLEPGAADFLVLVGPAVSWQAQGAYHTRVRFE HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCEEEEEEEE RAGYTRAAIAQALEASAAQDKTLFAHDIPPSPLPAGMTPARWGFIQVNRNSDASADLAAL CCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHH ELPLMAIWGAQDLNVDAVRDFDRYRSLRAAAAAETKLQLWPEATHGLLRAKTYNYQSFDE HCCHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHEEEECCCCCCCH WSWFAHARFMLAGRGAYAPGALDAIADWILARSS HHHHHHHEEEEECCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA