| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081509
Identifier: 99081509
GI number: 99081509
Start: 1767772
End: 1768983
Strand: Reverse
Name: 99081509
Synonym: TM1040_1668
Alternate gene names: NA
Gene position: 1768983-1767772 (Counterclockwise)
Preceding gene: 99081510
Following gene: 99081508
Centisome position: 55.26
GC content: 62.54
Gene sequence:
>1212_bases ATGGCTGAAGAAAACACCAGGTCGGTGGCGGAACTCGCTGCCGAAATCAAAGCCGACCACGCCAAGAGCGTTGATGCCGT CAAGGCCATTGCCGAGGAAGCCCTGGGCAAAGCTCAGAGCGGCGAAAAGTTGGCGAACGACCTGAAGGAAAAGGCCGACG AGGCCCTGACCGAAATGAACGGCTTCAAAGCGTCTCTGGACGCGCTGGAGCAAAAGCTGGCGCGCGGCGCGGGCGGCGAA GGTAGCGACGGCGAAAAGTCGCTGGGACAGCGCTTCGTTGAGAGCGAGGGCTTCAAGTCGTTCAAGGACGGCGGCTTTGA CCGTCACAGCAAGGCGAAGCTGGAAACCAAGGCGACCCTGACCCTGGCGACCACTGACACAGATGGCGCCGTTGGCGATG GTGTAGCCCCGACCCGCCTGCCGGGCATCCAGGGCTTGCCGCAGCGCCGCCTGACCATCCGCGATCTGCTGGCGCAGGGC CGCATGGATGGCAACACCATCGAGTACGTGCAGGAGACCGGTTTCAACAACAACGCGGCTCCGGTGGCCGAAGGCGCTGC AAAGCCGTCCTCAGATATCAAGCTGGACGTGAAAACCACCACTGCCAAGGTGATCGCGCACTGGATGAAGGCATCGCGCC AGGCGCTGGATGATGTTTCCGCCCTGCGCTCGATGATCGACCAGCGCCTGCTGTTCGGCCTGGCGCTGGCGGAAGAAAAC CAGCTTTTGAACGGTGACGGCACCGGCCAGAACCTGTCCGGCCTGATCACCAACGCCACAGCCTATTCGGCGGCGTTTGC GCCGGCATCCGAGACCGCAATCGACAAGATGCGCCTCGCCATGCTGCAAGCGGCTCTGGCTGAATACCCGGCAACGGGAC ACGTGATGCACCCGACCGACTGGGCACGGATCGAGCTGACCAAGGACGGCAACGCCAACTACATCATCGGCAAGCCGCAA GGCACCATCGCGCCGACCCTCTGGGGCCTGCCGGTTGTGGCTACACAGGCGATCACCGTGGACAAGTTCCTGACCGGTGC GTTCAACATGGGTGCTCAGATCTTCGACCGCTGGGATGCGACGGTCGAAACCGGCTACGAGAATGACGACTTCACCAAGA ACCTCGTCACCATCCTGGCCGAGGAGCGTCTGGCGCTGGCGATATTCCGCCCCGAAGCGTTTATCTACGGCGATCTGGGC TACGTGGCCTAA
Upstream 100 bases:
>100_bases CATCCACCTGAAAGGGCCGGGGGAACCGGCAGCGGCAACTGAAGCCCGTGCATTGCTTGAAGCACTGCGGGCATAAACCC ACCTGACATAGGAGCCTATC
Downstream 100 bases:
>100_bases GCGTCGGCTGATCAAGGAGGGCGGGGAAGCTCGCCCTCTCTATGAGCCGAAAGGAGACCGTCATGGAAAAGTATGAAGTC ATGCGCCGCCACCAAGGCGA
Product: phage major capsid protein, HK97
Products: NA
Alternate protein names: HK97 Family Phage Capsid Protein; Phage Capsid Protein HK; Head Protein; Phage Capsid Protein; Phage Head; Phage Head Protein; Capsid Protein; Phage Capsid Family; Prophage LambdaSo; Phage Protein; Capsid Protein HK; Serine/Arginine Repetitive Matrix; Phage Capsid Subunit
Number of amino acids: Translated: 403; Mature: 402
Protein sequence:
>403_residues MAEENTRSVAELAAEIKADHAKSVDAVKAIAEEALGKAQSGEKLANDLKEKADEALTEMNGFKASLDALEQKLARGAGGE GSDGEKSLGQRFVESEGFKSFKDGGFDRHSKAKLETKATLTLATTDTDGAVGDGVAPTRLPGIQGLPQRRLTIRDLLAQG RMDGNTIEYVQETGFNNNAAPVAEGAAKPSSDIKLDVKTTTAKVIAHWMKASRQALDDVSALRSMIDQRLLFGLALAEEN QLLNGDGTGQNLSGLITNATAYSAAFAPASETAIDKMRLAMLQAALAEYPATGHVMHPTDWARIELTKDGNANYIIGKPQ GTIAPTLWGLPVVATQAITVDKFLTGAFNMGAQIFDRWDATVETGYENDDFTKNLVTILAEERLALAIFRPEAFIYGDLG YVA
Sequences:
>Translated_403_residues MAEENTRSVAELAAEIKADHAKSVDAVKAIAEEALGKAQSGEKLANDLKEKADEALTEMNGFKASLDALEQKLARGAGGE GSDGEKSLGQRFVESEGFKSFKDGGFDRHSKAKLETKATLTLATTDTDGAVGDGVAPTRLPGIQGLPQRRLTIRDLLAQG RMDGNTIEYVQETGFNNNAAPVAEGAAKPSSDIKLDVKTTTAKVIAHWMKASRQALDDVSALRSMIDQRLLFGLALAEEN QLLNGDGTGQNLSGLITNATAYSAAFAPASETAIDKMRLAMLQAALAEYPATGHVMHPTDWARIELTKDGNANYIIGKPQ GTIAPTLWGLPVVATQAITVDKFLTGAFNMGAQIFDRWDATVETGYENDDFTKNLVTILAEERLALAIFRPEAFIYGDLG YVA >Mature_402_residues AEENTRSVAELAAEIKADHAKSVDAVKAIAEEALGKAQSGEKLANDLKEKADEALTEMNGFKASLDALEQKLARGAGGEG SDGEKSLGQRFVESEGFKSFKDGGFDRHSKAKLETKATLTLATTDTDGAVGDGVAPTRLPGIQGLPQRRLTIRDLLAQGR MDGNTIEYVQETGFNNNAAPVAEGAAKPSSDIKLDVKTTTAKVIAHWMKASRQALDDVSALRSMIDQRLLFGLALAEENQ LLNGDGTGQNLSGLITNATAYSAAFAPASETAIDKMRLAMLQAALAEYPATGHVMHPTDWARIELTKDGNANYIIGKPQG TIAPTLWGLPVVATQAITVDKFLTGAFNMGAQIFDRWDATVETGYENDDFTKNLVTILAEERLALAIFRPEAFIYGDLGY VA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43037; Mature: 42906
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEENTRSVAELAAEIKADHAKSVDAVKAIAEEALGKAQSGEKLANDLKEKADEALTEMN CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC GFKASLDALEQKLARGAGGEGSDGEKSLGQRFVESEGFKSFKDGGFDRHSKAKLETKATL CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCEEEEEEE TLATTDTDGAVGDGVAPTRLPGIQGLPQRRLTIRDLLAQGRMDGNTIEYVQETGFNNNAA EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCC PVAEGAAKPSSDIKLDVKTTTAKVIAHWMKASRQALDDVSALRSMIDQRLLFGLALAEEN CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QLLNGDGTGQNLSGLITNATAYSAAFAPASETAIDKMRLAMLQAALAEYPATGHVMHPTD CEECCCCCCCCCCHHEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCC WARIELTKDGNANYIIGKPQGTIAPTLWGLPVVATQAITVDKFLTGAFNMGAQIFDRWDA CEEEEEEECCCCCEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TVETGYENDDFTKNLVTILAEERLALAIFRPEAFIYGDLGYVA HHCCCCCCCHHHHHHHHHHHHCCEEEEEECCCEEEEECCHHCC >Mature Secondary Structure AEENTRSVAELAAEIKADHAKSVDAVKAIAEEALGKAQSGEKLANDLKEKADEALTEMN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC GFKASLDALEQKLARGAGGEGSDGEKSLGQRFVESEGFKSFKDGGFDRHSKAKLETKATL CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCEEEEEEE TLATTDTDGAVGDGVAPTRLPGIQGLPQRRLTIRDLLAQGRMDGNTIEYVQETGFNNNAA EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCC PVAEGAAKPSSDIKLDVKTTTAKVIAHWMKASRQALDDVSALRSMIDQRLLFGLALAEEN CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QLLNGDGTGQNLSGLITNATAYSAAFAPASETAIDKMRLAMLQAALAEYPATGHVMHPTD CEECCCCCCCCCCHHEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCC WARIELTKDGNANYIIGKPQGTIAPTLWGLPVVATQAITVDKFLTGAFNMGAQIFDRWDA CEEEEEEECCCCCEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TVETGYENDDFTKNLVTILAEERLALAIFRPEAFIYGDLGYVA HHCCCCCCCHHHHHHHHHHHHCCEEEEEECCCEEEEECCHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA