| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081510
Identifier: 99081510
GI number: 99081510
Start: 1769008
End: 1769694
Strand: Reverse
Name: 99081510
Synonym: TM1040_1669
Alternate gene names: NA
Gene position: 1769694-1769008 (Counterclockwise)
Preceding gene: 99081511
Following gene: 99081509
Centisome position: 55.29
GC content: 61.57
Gene sequence:
>687_bases ATGACGATGATGCATAAGGCGGCGGCTCCGATCCTTTCGATCAAGGCACTGGACGAGGAAACCGGCGAATTCGAGGGCTA CGGCAGCACTTTCGGCGGCGAGCCTGACAGCTATGGCGATGTGGTGGTGGCGGGGGCTTTCGCTGACAGCCTGGCAGAGC ACAAGGCCAAAGGCACCATGCCCAAGCTGTTATGGCAGCATGACCCCTCGCAGCCCATCGGTAAGTTGCTGGAGGCCGAG GAAGATGAAACCGGCCTGCTGATCCGCGGGCGCTTGAATATGGGCGTCCAGCGTGGCCGCGAGGCGGCTGCTCTGCTCAA GGCGGGCGATATCGACGGCCTGTCCATCGGCTACCGGATCACCCCGGGCGGCTTCCGGGTCGATGATGACAATGGCGTCT GGTATCTCGAAAAGCTGGATCTGTTCGAGGTCTCGATTGTCTCTATCGGAGCCAACGAGAGCGCGACGATCACCAGCGTG AAGGCGGCCAAGGCCGCTCACGAAATCACGGAAAAGCTCAAAGCCGGGGATCGGCTCACTGAGCGAGAGTTTGAAACGCT GCTCAAGGGGAGCTTGGGGCTTTCGAACTCACAGGCGGAGCGTGCCGCACGCATCCACCTGAAAGGGCCGGGGGAACCGG CAGCGGCAACTGAAGCCCGTGCATTGCTTGAAGCACTGCGGGCATAA
Upstream 100 bases:
>100_bases GCGCTGGAGAACAAGCCCCCGGTGGCGGGCGGCGAGGTGCCGCGAATGCAGATGCAGAACGTGCCGATCACCGAGGTAGG CAAGCAATTGGAGGCTGGAA
Downstream 100 bases:
>100_bases ACCCACCTGACATAGGAGCCTATCATGGCTGAAGAAAACACCAGGTCGGTGGCGGAACTCGCTGCCGAAATCAAAGCCGA CCACGCCAAGAGCGTTGATG
Product: prohead peptidase
Products: NA
Alternate protein names: HK97 Family Phage Prohead Protease; Peptidase; Prohead Peptidase; Caudovirus Prohead Protease; HK97 Family Phage Capsid Protein; Head Maturation Protease; Phage Head Maturation Protease; Phage Prohead Protease And Phage Capsid Protein; Phage-Related Protein; Phage Protein; HK97 Family Phage Prohead Protease/Phage Capsid Protein; Phage Protease; Prohead Protease; Phage Pro-Head Protease; Prophage LambdaSa2 Protease
Number of amino acids: Translated: 228; Mature: 227
Protein sequence:
>228_residues MTMMHKAAAPILSIKALDEETGEFEGYGSTFGGEPDSYGDVVVAGAFADSLAEHKAKGTMPKLLWQHDPSQPIGKLLEAE EDETGLLIRGRLNMGVQRGREAAALLKAGDIDGLSIGYRITPGGFRVDDDNGVWYLEKLDLFEVSIVSIGANESATITSV KAAKAAHEITEKLKAGDRLTEREFETLLKGSLGLSNSQAERAARIHLKGPGEPAAATEARALLEALRA
Sequences:
>Translated_228_residues MTMMHKAAAPILSIKALDEETGEFEGYGSTFGGEPDSYGDVVVAGAFADSLAEHKAKGTMPKLLWQHDPSQPIGKLLEAE EDETGLLIRGRLNMGVQRGREAAALLKAGDIDGLSIGYRITPGGFRVDDDNGVWYLEKLDLFEVSIVSIGANESATITSV KAAKAAHEITEKLKAGDRLTEREFETLLKGSLGLSNSQAERAARIHLKGPGEPAAATEARALLEALRA >Mature_227_residues TMMHKAAAPILSIKALDEETGEFEGYGSTFGGEPDSYGDVVVAGAFADSLAEHKAKGTMPKLLWQHDPSQPIGKLLEAEE DETGLLIRGRLNMGVQRGREAAALLKAGDIDGLSIGYRITPGGFRVDDDNGVWYLEKLDLFEVSIVSIGANESATITSVK AAKAAHEITEKLKAGDRLTEREFETLLKGSLGLSNSQAERAARIHLKGPGEPAAATEARALLEALRA
Specific function: Unknown
COG id: COG3740
COG function: function code R; Phage head maturation protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24316; Mature: 24185
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMMHKAAAPILSIKALDEETGEFEGYGSTFGGEPDSYGDVVVAGAFADSLAEHKAKGTM CCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCC PKLLWQHDPSQPIGKLLEAEEDETGLLIRGRLNMGVQRGREAAALLKAGDIDGLSIGYRI HHHHHCCCCCCHHHHHHCCCCCCCCEEEEECCHHCHHCCHHHHHHHHCCCCCCEEECEEE TPGGFRVDDDNGVWYLEKLDLFEVSIVSIGANESATITSVKAAKAAHEITEKLKAGDRLT CCCCEEEECCCCEEEEEECCEEEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHCCCCHH EREFETLLKGSLGLSNSQAERAARIHLKGPGEPAAATEARALLEALRA HHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure TMMHKAAAPILSIKALDEETGEFEGYGSTFGGEPDSYGDVVVAGAFADSLAEHKAKGTM CCCHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCC PKLLWQHDPSQPIGKLLEAEEDETGLLIRGRLNMGVQRGREAAALLKAGDIDGLSIGYRI HHHHHCCCCCCHHHHHHCCCCCCCCEEEEECCHHCHHCCHHHHHHHHCCCCCCEEECEEE TPGGFRVDDDNGVWYLEKLDLFEVSIVSIGANESATITSVKAAKAAHEITEKLKAGDRLT CCCCEEEECCCCEEEEEECCEEEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHCCCCHH EREFETLLKGSLGLSNSQAERAARIHLKGPGEPAAATEARALLEALRA HHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA