| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081443
Identifier: 99081443
GI number: 99081443
Start: 1713369
End: 1714235
Strand: Reverse
Name: 99081443
Synonym: TM1040_1602
Alternate gene names: NA
Gene position: 1714235-1713369 (Counterclockwise)
Preceding gene: 99081444
Following gene: 99081442
Centisome position: 53.55
GC content: 46.02
Gene sequence:
>867_bases GTGACCGAATTTTTTGCAAATGTTGGTGTTGTGCTGTCGGCAATTGGACAGGGTTTAAAGGAAGATCCAGCTAAGTTTCA GCACCTAATTGGTGGGGGCTTAGCGTTTTTTGGTGTCTTGCTGACGGTGTGGACAACAGGCCGACGTCTCCGAGAGCAGC TCGCTCACGCTACGCAGCTGGATAAAGCACGTCATGAAAGGGACTTAGAGGTCAAGCGTCGTTCCTTGAAGGGAGCACTT TCTGCTGAACTTTCAGTTATCTCAGGCTTCCTAAGAGACGAAGATATCCAACTGCGTAAGTGGATCACCCCTGACTGGAA GACCATTGAAGAATTGCGCGTCGAACCTGACGAGGCAATCGATCTCGAACTGCTAGTACCAGAAGTTAAGAAGACCGACA CGCTCAATAGACCTGAAGCCCCTTACAGGTTCTCTATGCCTGAGAGGGACGAAATCTATAGCGCGCTCGTAGGTGAACTT GCGGTTCTAAGTGTAGAAGAAATTCAGACAATCATCGTCGCATACGACAAGTTTCAGTCATTTAAAAGCTGGGTTAAAGA ACATTGTGATGACCAGGTCGAGCAGACAAACGTCTATATTTTTTCGAAGGGAAAAGACCTGTGTTCTCTCCAAGCTCAAA TTGAAGATGCCAAGACGGAACTAGACTGGTACTTGAGTACGCTGCTAGATGAGATTACTTTGAAGGAGCCGGCATCTAGC AGCGCATCAAAATGGTGTAGTTTTGTATCCCCAAGCTACTTGGTATTACTTGGTGCGAGCTTTTTGTTTGGATTTTGGGT CAATAGTTCAACTGTTGAGAATGAACCGACAAGCACTAATGAGACTAAGTCGATTAAATCGAAATAG
Upstream 100 bases:
>100_bases TGTGTTCAATGGCGTCGACAGACTCGCTTGGCATGGGTTTGATTGGGAAGAGGGTGCTTGGTTCGTTGCTCACCCTCAGA ATTCATTGGAGTGATTTTTC
Downstream 100 bases:
>100_bases GAGGTTGAGAACATCAAGTGGATTTTTTTACGCGTATCTCTGATGTTGTTTCCTGCGTGCTGCGCCCAGTTTCAGATCAG AGTGAAAATCACTTTTTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MTEFFANVGVVLSAIGQGLKEDPAKFQHLIGGGLAFFGVLLTVWTTGRRLREQLAHATQLDKARHERDLEVKRRSLKGAL SAELSVISGFLRDEDIQLRKWITPDWKTIEELRVEPDEAIDLELLVPEVKKTDTLNRPEAPYRFSMPERDEIYSALVGEL AVLSVEEIQTIIVAYDKFQSFKSWVKEHCDDQVEQTNVYIFSKGKDLCSLQAQIEDAKTELDWYLSTLLDEITLKEPASS SASKWCSFVSPSYLVLLGASFLFGFWVNSSTVENEPTSTNETKSIKSK
Sequences:
>Translated_288_residues MTEFFANVGVVLSAIGQGLKEDPAKFQHLIGGGLAFFGVLLTVWTTGRRLREQLAHATQLDKARHERDLEVKRRSLKGAL SAELSVISGFLRDEDIQLRKWITPDWKTIEELRVEPDEAIDLELLVPEVKKTDTLNRPEAPYRFSMPERDEIYSALVGEL AVLSVEEIQTIIVAYDKFQSFKSWVKEHCDDQVEQTNVYIFSKGKDLCSLQAQIEDAKTELDWYLSTLLDEITLKEPASS SASKWCSFVSPSYLVLLGASFLFGFWVNSSTVENEPTSTNETKSIKSK >Mature_287_residues TEFFANVGVVLSAIGQGLKEDPAKFQHLIGGGLAFFGVLLTVWTTGRRLREQLAHATQLDKARHERDLEVKRRSLKGALS AELSVISGFLRDEDIQLRKWITPDWKTIEELRVEPDEAIDLELLVPEVKKTDTLNRPEAPYRFSMPERDEIYSALVGELA VLSVEEIQTIIVAYDKFQSFKSWVKEHCDDQVEQTNVYIFSKGKDLCSLQAQIEDAKTELDWYLSTLLDEITLKEPASSS ASKWCSFVSPSYLVLLGASFLFGFWVNSSTVENEPTSTNETKSIKSK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32572; Mature: 32441
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEFFANVGVVLSAIGQGLKEDPAKFQHLIGGGLAFFGVLLTVWTTGRRLREQLAHATQL CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH DKARHERDLEVKRRSLKGALSAELSVISGFLRDEDIQLRKWITPDWKTIEELRVEPDEAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHCCCCCCC DLELLVPEVKKTDTLNRPEAPYRFSMPERDEIYSALVGELAVLSVEEIQTIIVAYDKFQS CCEEECCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FKSWVKEHCDDQVEQTNVYIFSKGKDLCSLQAQIEDAKTELDWYLSTLLDEITLKEPASS HHHHHHHHHCCHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC SASKWCSFVSPSYLVLLGASFLFGFWVNSSTVENEPTSTNETKSIKSK CHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCC >Mature Secondary Structure TEFFANVGVVLSAIGQGLKEDPAKFQHLIGGGLAFFGVLLTVWTTGRRLREQLAHATQL CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH DKARHERDLEVKRRSLKGALSAELSVISGFLRDEDIQLRKWITPDWKTIEELRVEPDEAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHCCCCCCC DLELLVPEVKKTDTLNRPEAPYRFSMPERDEIYSALVGELAVLSVEEIQTIIVAYDKFQS CCEEECCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FKSWVKEHCDDQVEQTNVYIFSKGKDLCSLQAQIEDAKTELDWYLSTLLDEITLKEPASS HHHHHHHHHCCHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC SASKWCSFVSPSYLVLLGASFLFGFWVNSSTVENEPTSTNETKSIKSK CHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA