Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081442

Identifier: 99081442

GI number: 99081442

Start: 1712755

End: 1713351

Strand: Reverse

Name: 99081442

Synonym: TM1040_1601

Alternate gene names: NA

Gene position: 1713351-1712755 (Counterclockwise)

Preceding gene: 99081443

Following gene: 99081440

Centisome position: 53.53

GC content: 47.4

Gene sequence:

>597_bases
GTGGATTTTTTTACGCGTATCTCTGATGTTGTTTCCTGCGTGCTGCGCCCAGTTTCAGATCAGAGTGAAAATCACTTTTT
TGAGTTTTCATGGTTGAAGAAGCTAGGCGCAACGGATGTCGCCACGGCCATTGCAACCGTAGTAATTGCTGTATTTACGG
TTGCGATGTTTAGGCTTCATAAAGAGCAACAAAAGCACGATAGAGCCGTAGCCAGAGCGAACTACCAATTTTCTCTTTTT
GAAAAGAGGCTTGAGGTCTATTTTGAAGTTCAACGTTTTTTCTATTCGGCGTTTGAGCACCGTGTTCCACAAATGGAAAG
TATAGGCGCGCTTCACAAGTCATCCGCTACCGGAACCTTCATTTTTGGTGAGAAAGTCAAGGCGTTCCTTTCTGATTGTG
TCAACAAAGCTATGCGACACCATCAATTGGAAACGCGGCGCACGCGCAATGCCGGGATCGACGAGGAAATAGTACAGAGG
TGCATGGTTGAACAAGCCGAAATCGAAGATTGGTTGTCTGGAAAGGGTGCTCCTGCCTCGCTCGAGCAGATGTTTTCTGA
GTATCTGGAGCTCCCCGCCGACCTCCCAAGGGAGTAA

Upstream 100 bases:

>100_bases
TGTTTGGATTTTGGGTCAATAGTTCAACTGTTGAGAATGAACCGACAAGCACTAATGAGACTAAGTCGATTAAATCGAAA
TAGGAGGTTGAGAACATCAA

Downstream 100 bases:

>100_bases
AGACTGAGTCAAACTCAGTGCTCGTGCTATTTGGAGGCGTTGATCTTGCGGCTTTTATGTTCTACATACGTTCTCTCTCG
CGGAGAGCGTAATCCATGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MDFFTRISDVVSCVLRPVSDQSENHFFEFSWLKKLGATDVATAIATVVIAVFTVAMFRLHKEQQKHDRAVARANYQFSLF
EKRLEVYFEVQRFFYSAFEHRVPQMESIGALHKSSATGTFIFGEKVKAFLSDCVNKAMRHHQLETRRTRNAGIDEEIVQR
CMVEQAEIEDWLSGKGAPASLEQMFSEYLELPADLPRE

Sequences:

>Translated_198_residues
MDFFTRISDVVSCVLRPVSDQSENHFFEFSWLKKLGATDVATAIATVVIAVFTVAMFRLHKEQQKHDRAVARANYQFSLF
EKRLEVYFEVQRFFYSAFEHRVPQMESIGALHKSSATGTFIFGEKVKAFLSDCVNKAMRHHQLETRRTRNAGIDEEIVQR
CMVEQAEIEDWLSGKGAPASLEQMFSEYLELPADLPRE
>Mature_198_residues
MDFFTRISDVVSCVLRPVSDQSENHFFEFSWLKKLGATDVATAIATVVIAVFTVAMFRLHKEQQKHDRAVARANYQFSLF
EKRLEVYFEVQRFFYSAFEHRVPQMESIGALHKSSATGTFIFGEKVKAFLSDCVNKAMRHHQLETRRTRNAGIDEEIVQR
CMVEQAEIEDWLSGKGAPASLEQMFSEYLELPADLPRE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22836; Mature: 22836

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFFTRISDVVSCVLRPVSDQSENHFFEFSWLKKLGATDVATAIATVVIAVFTVAMFRLH
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
KEQQKHDRAVARANYQFSLFEKRLEVYFEVQRFFYSAFEHRVPQMESIGALHKSSATGTF
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHH
IFGEKVKAFLSDCVNKAMRHHQLETRRTRNAGIDEEIVQRCMVEQAEIEDWLSGKGAPAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
LEQMFSEYLELPADLPRE
HHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDFFTRISDVVSCVLRPVSDQSENHFFEFSWLKKLGATDVATAIATVVIAVFTVAMFRLH
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
KEQQKHDRAVARANYQFSLFEKRLEVYFEVQRFFYSAFEHRVPQMESIGALHKSSATGTF
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHH
IFGEKVKAFLSDCVNKAMRHHQLETRRTRNAGIDEEIVQRCMVEQAEIEDWLSGKGAPAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
LEQMFSEYLELPADLPRE
HHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA