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The map label for this gene is yfjD [H]

Identifier: 99081268

GI number: 99081268

Start: 1524444

End: 1525757

Strand: Reverse

Name: yfjD [H]

Synonym: TM1040_1427

Alternate gene names: 99081268

Gene position: 1525757-1524444 (Counterclockwise)

Preceding gene: 99081269

Following gene: 99081267

Centisome position: 47.67

GC content: 59.28

Gene sequence:

>1314_bases
ATGGACAGCGCTACAGCCGCACTTGACACTTCCTTCTGGATTACCGCCGGGGGCATTGTTTTGTTGTTGGTTCTCTCCGG
GTTCTTTTCGGGATCCGAGACCGCTTTGACGGCAGCCTCACGCGGCAAGCTGCGCAGCCAGGCCGACAAGGGATCGCGCG
GCGCCGCGCGCGCACTCGAAGTCACCGAGGACAATGAGAAGCTGATCGGTTCGGTTCTTCTGGGCAACAACCTCGTGAAC
ATCCTTGCCGCCTCGCTTGCGACGGCGCTTTTCACCAAACTCTTTGGAGAGAGCGGCGTGGCGCTCGCCACGCTCGTCAT
GACGCTTCTGGTGTTGATCTTTGCAGAGGTGCTGCCCAAGACCTATGCGATCACCAACTCCGAGAAGGCTGCGGCCGCGG
TCGCGCCGATCATCGGCTCGCTGGTGAAAATCCTGGCCCCGATCGTGGGCGCGGTGCGCTTTCTCGTGCGCGGTGTGCTG
CGGGTCTTTGGTGTAAAAATCGATCCCGACAGCCACATCATGGCGGTGCGCGAGGAAATCGTGGGCGCGCTTCAGATCGG
CCATTCCGAAGGTGTGGTCGAGAAAGAAGACCGCGACCGTATCCTGGGGGCGCTTGATCTCTCTGACCGCTTTGTCGAAG
AGATCATGCTCCACCGTTCAAAGATCGAAATGATTGACGCGGAGGCCGATCCCGAGGCGATTCTGGAGCAATGTCTGACG
TCCTCGCACACGCGTCTGCCGCTCTATCGCAAGGATCAGGAAAACATTATCGGCGTGGTGCATGCCAAGGACCTGCTGCG
GCAGATGTATGCCAAGATCGGTGGCGCGGATGGGGATGCCTCTGCGCTGCGTGATTTTCAGATCACCGAGGTCTGCAAGC
CGCCCTATTTTGTGCCCGAAACCACGACGCTTGATGACCAGATGCGCCAGTTTCTGCGCATGCGGACGCATTTTGCGCTG
GTGGTGGATGAATATGGCTCGCTGCAGGGGCTGATCACGCTTGAGGATATTCTCGAAGAGATCGTGGGCGAGATCACCGA
TGAATTCGACCCCGCCGAGCAGAGTTTTGCGCGCAAGACCAGTGATGGGAATTTCATCGTCGAAGGGGCGACCACGATCC
GCGATCTCAATCGTGCGATGGATTGGAACCTGCCGGATCTTGAGGCAAACACTGTTGCAGGCCTGGTTATCCATGAGGCA
CAGATGATCCCAACGGTGGGGCAGGTGTTCTCTTTCCACGGGTTCCGGTTCGAAGTGACGGCCCGCGAAGGCAATCGCGT
GACGCGGCTGAAGATCCGCCCCCTGCACGGCTGA

Upstream 100 bases:

>100_bases
AAAGACGACGAAACTCGTTGATTTCGGGGGGCGCGCCGCTTGAACCACGGCGCTCTGCACCCCATAACCACTGAAACCCC
ACATCAATCAGGACCCTAAA

Downstream 100 bases:

>100_bases
CACCGCAACCTCAGTGAGTTTGTGCCTGTGTTTCGCTTTGGGCGCCGCGCTTCGTACAAGATGAATGGTTTCTTTGTGGC
AGAGTGCGTTGGGTCCGTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MDSATAALDTSFWITAGGIVLLLVLSGFFSGSETALTAASRGKLRSQADKGSRGAARALEVTEDNEKLIGSVLLGNNLVN
ILAASLATALFTKLFGESGVALATLVMTLLVLIFAEVLPKTYAITNSEKAAAAVAPIIGSLVKILAPIVGAVRFLVRGVL
RVFGVKIDPDSHIMAVREEIVGALQIGHSEGVVEKEDRDRILGALDLSDRFVEEIMLHRSKIEMIDAEADPEAILEQCLT
SSHTRLPLYRKDQENIIGVVHAKDLLRQMYAKIGGADGDASALRDFQITEVCKPPYFVPETTTLDDQMRQFLRMRTHFAL
VVDEYGSLQGLITLEDILEEIVGEITDEFDPAEQSFARKTSDGNFIVEGATTIRDLNRAMDWNLPDLEANTVAGLVIHEA
QMIPTVGQVFSFHGFRFEVTAREGNRVTRLKIRPLHG

Sequences:

>Translated_437_residues
MDSATAALDTSFWITAGGIVLLLVLSGFFSGSETALTAASRGKLRSQADKGSRGAARALEVTEDNEKLIGSVLLGNNLVN
ILAASLATALFTKLFGESGVALATLVMTLLVLIFAEVLPKTYAITNSEKAAAAVAPIIGSLVKILAPIVGAVRFLVRGVL
RVFGVKIDPDSHIMAVREEIVGALQIGHSEGVVEKEDRDRILGALDLSDRFVEEIMLHRSKIEMIDAEADPEAILEQCLT
SSHTRLPLYRKDQENIIGVVHAKDLLRQMYAKIGGADGDASALRDFQITEVCKPPYFVPETTTLDDQMRQFLRMRTHFAL
VVDEYGSLQGLITLEDILEEIVGEITDEFDPAEQSFARKTSDGNFIVEGATTIRDLNRAMDWNLPDLEANTVAGLVIHEA
QMIPTVGQVFSFHGFRFEVTAREGNRVTRLKIRPLHG
>Mature_437_residues
MDSATAALDTSFWITAGGIVLLLVLSGFFSGSETALTAASRGKLRSQADKGSRGAARALEVTEDNEKLIGSVLLGNNLVN
ILAASLATALFTKLFGESGVALATLVMTLLVLIFAEVLPKTYAITNSEKAAAAVAPIIGSLVKILAPIVGAVRFLVRGVL
RVFGVKIDPDSHIMAVREEIVGALQIGHSEGVVEKEDRDRILGALDLSDRFVEEIMLHRSKIEMIDAEADPEAILEQCLT
SSHTRLPLYRKDQENIIGVVHAKDLLRQMYAKIGGADGDASALRDFQITEVCKPPYFVPETTTLDDQMRQFLRMRTHFAL
VVDEYGSLQGLITLEDILEEIVGEITDEFDPAEQSFARKTSDGNFIVEGATTIRDLNRAMDWNLPDLEANTVAGLVIHEA
QMIPTVGQVFSFHGFRFEVTAREGNRVTRLKIRPLHG

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=391, Percent_Identity=25.8312020460358, Blast_Score=125, Evalue=8e-29,
Organism=Homo sapiens, GI94681046, Length=363, Percent_Identity=30.3030303030303, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI40068055, Length=355, Percent_Identity=30.1408450704225, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI40068053, Length=355, Percent_Identity=30.1408450704225, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI40068051, Length=313, Percent_Identity=29.073482428115, Blast_Score=78, Evalue=2e-14,
Organism=Escherichia coli, GI145693175, Length=412, Percent_Identity=34.4660194174757, Blast_Score=249, Evalue=3e-67,
Organism=Escherichia coli, GI1790664, Length=427, Percent_Identity=25.0585480093677, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1786879, Length=257, Percent_Identity=30.3501945525292, Blast_Score=128, Evalue=8e-31,
Organism=Escherichia coli, GI87082033, Length=250, Percent_Identity=32.4, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1788119, Length=252, Percent_Identity=31.7460317460317, Blast_Score=100, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71980512, Length=369, Percent_Identity=25.7452574525745, Blast_Score=80, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17539402, Length=352, Percent_Identity=25.8522727272727, Blast_Score=76, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6324512, Length=355, Percent_Identity=24.2253521126761, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 47628; Mature: 47628

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSATAALDTSFWITAGGIVLLLVLSGFFSGSETALTAASRGKLRSQADKGSRGAARALE
CCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCHHHHHCCCCCCCHHHEEE
VTEDNEKLIGSVLLGNNLVNILAASLATALFTKLFGESGVALATLVMTLLVLIFAEVLPK
ECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
TYAITNSEKAAAAVAPIIGSLVKILAPIVGAVRFLVRGVLRVFGVKIDPDSHIMAVREEI
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHH
VGALQIGHSEGVVEKEDRDRILGALDLSDRFVEEIMLHRSKIEMIDAEADPEAILEQCLT
HHHHHCCCCCCCCCCCCHHHHEEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
SSHTRLPLYRKDQENIIGVVHAKDLLRQMYAKIGGADGDASALRDFQITEVCKPPYFVPE
CCCCCCCCEECCCCCEEEEHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHCCCCCCCCC
TTTLDDQMRQFLRMRTHFALVVDEYGSLQGLITLEDILEEIVGEITDEFDPAEQSFARKT
CCCHHHHHHHHHHHHHHHHEEEECCCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHCC
SDGNFIVEGATTIRDLNRAMDWNLPDLEANTVAGLVIHEAQMIPTVGQVFSFHGFRFEVT
CCCCEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEE
AREGNRVTRLKIRPLHG
ECCCCEEEEEEEEECCC
>Mature Secondary Structure
MDSATAALDTSFWITAGGIVLLLVLSGFFSGSETALTAASRGKLRSQADKGSRGAARALE
CCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCHHHHHCCCCCCCHHHEEE
VTEDNEKLIGSVLLGNNLVNILAASLATALFTKLFGESGVALATLVMTLLVLIFAEVLPK
ECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
TYAITNSEKAAAAVAPIIGSLVKILAPIVGAVRFLVRGVLRVFGVKIDPDSHIMAVREEI
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHH
VGALQIGHSEGVVEKEDRDRILGALDLSDRFVEEIMLHRSKIEMIDAEADPEAILEQCLT
HHHHHCCCCCCCCCCCCHHHHEEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
SSHTRLPLYRKDQENIIGVVHAKDLLRQMYAKIGGADGDASALRDFQITEVCKPPYFVPE
CCCCCCCCEECCCCCEEEEHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHCCCCCCCCC
TTTLDDQMRQFLRMRTHFALVVDEYGSLQGLITLEDILEEIVGEITDEFDPAEQSFARKT
CCCHHHHHHHHHHHHHHHHEEEECCCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHCC
SDGNFIVEGATTIRDLNRAMDWNLPDLEANTVAGLVIHEAQMIPTVGQVFSFHGFRFEVT
CCCCEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEE
AREGNRVTRLKIRPLHG
ECCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]