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The map label for this gene is ygaD [H]

Identifier: 99081207

GI number: 99081207

Start: 1460541

End: 1461020

Strand: Direct

Name: ygaD [H]

Synonym: TM1040_1366

Alternate gene names: 99081207

Gene position: 1460541-1461020 (Clockwise)

Preceding gene: 99081206

Following gene: 99081209

Centisome position: 45.63

GC content: 62.92

Gene sequence:

>480_bases
ATGAATATCAAAGACTTACTTCGCGCAGCTCAATCAAAGAATGCCACCATCGCCACAGCCGAAAGCTGCACCGGAGGCAT
GGTTGCGGCGGCGCTCACGGATATTCCCGGCTCCTCTGCGGTGGTGGATCGTGGGTTTGTGACCTATTCCAACGCCGCGA
AGATGCAGATGCTCGGCGTCCGTCCCGAGACGCTTCGGGAGTTTGGCGCCGTGAGCGAAGAAACCGCGCGCGAGATGGCA
GATGGGGCGCTGAAGGAAGCCGGAACGCAACTGGCCATCTCTGTCACCGGCATCGCAGGTCCCGGTGGCTCGGAGCATAA
GCCCGAAGGGCGCGTCTGCTTCGGTCTGGCACAAATCGGGGCCGAGACCAGAACGGAACTGGTGGAGTTTGGCGCGCTAG
GCCGGGACAAGGTGCGCCTCGCCAGCCGCGATCATGCGCTGGCGATGTTGATGCAGGCGCTCAGCGACAGCGGCGCCTGA

Upstream 100 bases:

>100_bases
AAGGTCCCTTTGGCGTTGTCATGGACGATGTCATAGCCGGTGGTATGGCCGCGGTAGGGGTCGCGATGCTTGCAGGCCTC
TCCCATGGGGTGCTTGGGCT

Downstream 100 bases:

>100_bases
CGGCGCAATCCGCCTTGTTAGAGCCTGATGTGGTCAGCCATAAAGCTCTGCCGCGCGCCGCTCAAATGCGCGCACGATCC
GCTGCATCGCCTCGTTGAAG

Product: CinA-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MNIKDLLRAAQSKNATIATAESCTGGMVAAALTDIPGSSAVVDRGFVTYSNAAKMQMLGVRPETLREFGAVSEETAREMA
DGALKEAGTQLAISVTGIAGPGGSEHKPEGRVCFGLAQIGAETRTELVEFGALGRDKVRLASRDHALAMLMQALSDSGA

Sequences:

>Translated_159_residues
MNIKDLLRAAQSKNATIATAESCTGGMVAAALTDIPGSSAVVDRGFVTYSNAAKMQMLGVRPETLREFGAVSEETAREMA
DGALKEAGTQLAISVTGIAGPGGSEHKPEGRVCFGLAQIGAETRTELVEFGALGRDKVRLASRDHALAMLMQALSDSGA
>Mature_159_residues
MNIKDLLRAAQSKNATIATAESCTGGMVAAALTDIPGSSAVVDRGFVTYSNAAKMQMLGVRPETLREFGAVSEETAREMA
DGALKEAGTQLAISVTGIAGPGGSEHKPEGRVCFGLAQIGAETRTELVEFGALGRDKVRLASRDHALAMLMQALSDSGA

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=148, Percent_Identity=53.3783783783784, Blast_Score=134, Evalue=2e-33,
Organism=Escherichia coli, GI1787818, Length=128, Percent_Identity=38.28125, Blast_Score=84, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 16426; Mature: 16426

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKDLLRAAQSKNATIATAESCTGGMVAAALTDIPGSSAVVDRGFVTYSNAAKMQMLGV
CCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCCCEECCCEEEECCCCEEEEECC
RPETLREFGAVSEETAREMADGALKEAGTQLAISVTGIAGPGGSEHKPEGRVCFGLAQIG
CHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEHHHHHC
AETRTELVEFGALGRDKVRLASRDHALAMLMQALSDSGA
HHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNIKDLLRAAQSKNATIATAESCTGGMVAAALTDIPGSSAVVDRGFVTYSNAAKMQMLGV
CCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCCCEECCCEEEECCCCEEEEECC
RPETLREFGAVSEETAREMADGALKEAGTQLAISVTGIAGPGGSEHKPEGRVCFGLAQIG
CHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEHHHHHC
AETRTELVEFGALGRDKVRLASRDHALAMLMQALSDSGA
HHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]