| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is pgpA [H]
Identifier: 99081206
GI number: 99081206
Start: 1460047
End: 1460544
Strand: Direct
Name: pgpA [H]
Synonym: TM1040_1365
Alternate gene names: 99081206
Gene position: 1460047-1460544 (Clockwise)
Preceding gene: 99081205
Following gene: 99081207
Centisome position: 45.61
GC content: 60.84
Gene sequence:
>498_bases ATGACACTTCCACAACTTCTCGGAACCTGTTGCGGAATAGGGTATTTTCGCCCTGCGCCCGGAACCTGGGGGTCACTGGC CGCGCTGCCGTTGACCTATGTGTTGCATGTCACGGGTGGCTTTCCTCTGCTCGCCGTTTTTACCGTGGCCTCTGTTCTTG TGGGCCTGTGGGCGGCCAAGGAAATGACCCGCGGCCAGGAAGATCTGGACCCTTCGGAATTCGTGCTGGATGAGCTCGCG GGGCAGATGCTTGCGCTCTGGGCCATATCTCTGCCGGCCTGGTTGCATGGACTGGAGATCACCGCGCTCTGGCCCGGTTG GGTCGCAGGATTTTTGCTGTTTCGGCTCTTTGATATCTGGAAGCCCGGGCCGGTGGGCTGGGCGGACCGCAAGAAAGGTC CCTTTGGCGTTGTCATGGACGATGTCATAGCCGGTGGTATGGCCGCGGTAGGGGTCGCGATGCTTGCAGGCCTCTCCCAT GGGGTGCTTGGGCTATGA
Upstream 100 bases:
>100_bases TGGGACGCCTCTCGATCAAGGCGACAACTTCAGAGCGGCTTGGGTTCACCGGTCGCAAAGAAGGCATCGCGGCACTGGCG ACAGCAACATTGGTGCGGGC
Downstream 100 bases:
>100_bases ATATCAAAGACTTACTTCGCGCAGCTCAATCAAAGAATGCCACCATCGCCACAGCCGAAAGCTGCACCGGAGGCATGGTT GCGGCGGCGCTCACGGATAT
Product: phosphatidylglycerophosphatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 165; Mature: 164
Protein sequence:
>165_residues MTLPQLLGTCCGIGYFRPAPGTWGSLAALPLTYVLHVTGGFPLLAVFTVASVLVGLWAAKEMTRGQEDLDPSEFVLDELA GQMLALWAISLPAWLHGLEITALWPGWVAGFLLFRLFDIWKPGPVGWADRKKGPFGVVMDDVIAGGMAAVGVAMLAGLSH GVLGL
Sequences:
>Translated_165_residues MTLPQLLGTCCGIGYFRPAPGTWGSLAALPLTYVLHVTGGFPLLAVFTVASVLVGLWAAKEMTRGQEDLDPSEFVLDELA GQMLALWAISLPAWLHGLEITALWPGWVAGFLLFRLFDIWKPGPVGWADRKKGPFGVVMDDVIAGGMAAVGVAMLAGLSH GVLGL >Mature_164_residues TLPQLLGTCCGIGYFRPAPGTWGSLAALPLTYVLHVTGGFPLLAVFTVASVLVGLWAAKEMTRGQEDLDPSEFVLDELAG QMLALWAISLPAWLHGLEITALWPGWVAGFLLFRLFDIWKPGPVGWADRKKGPFGVVMDDVIAGGMAAVGVAMLAGLSHG VLGL
Specific function: Specifically hydrolyzes phosphatidylglycerophosphate [H]
COG id: COG1267
COG function: function code I; Phosphatidylglycerophosphatase A and related proteins
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786620, Length=147, Percent_Identity=31.2925170068027, Blast_Score=68, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007686 [H]
Pfam domain/function: PF04608 PgpA [H]
EC number: =3.1.3.27 [H]
Molecular weight: Translated: 17473; Mature: 17342
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLPQLLGTCCGIGYFRPAPGTWGSLAALPLTYVLHVTGGFPLLAVFTVASVLVGLWAAK CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH EMTRGQEDLDPSEFVLDELAGQMLALWAISLPAWLHGLEITALWPGWVAGFLLFRLFDIW HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECHHHHHHHHHHHHHHHC KPGPVGWADRKKGPFGVVMDDVIAGGMAAVGVAMLAGLSHGVLGL CCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TLPQLLGTCCGIGYFRPAPGTWGSLAALPLTYVLHVTGGFPLLAVFTVASVLVGLWAAK CHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH EMTRGQEDLDPSEFVLDELAGQMLALWAISLPAWLHGLEITALWPGWVAGFLLFRLFDIW HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECHHHHHHHHHHHHHHHC KPGPVGWADRKKGPFGVVMDDVIAGGMAAVGVAMLAGLSHGVLGL CCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]