| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is braE [H]
Identifier: 99081117
GI number: 99081117
Start: 1374507
End: 1375832
Strand: Direct
Name: braE [H]
Synonym: TM1040_1276
Alternate gene names: 99081117
Gene position: 1374507-1375832 (Clockwise)
Preceding gene: 99081116
Following gene: 99081148
Centisome position: 42.94
GC content: 61.24
Gene sequence:
>1326_bases ATGAGCGATACGTTGAAACATACGCTTCTGTTCGCCTTCGTCGGCCTGTTGCTGGTGCTCGAGGGGACCACAAATGCGTT TGGCGTTTTCTCGGGATCGTGGAACTCTGCGTTGACCATCCTCAATATGGGGCTGATCTCGGCCATCATGGCGATTGGGG TCAATCTGCAGTGGGGGTTTGCCGGGTTGTTCAACGTCGGCATCATGGGCTTTACCGCGCTTGGCGGGCTGGCCGTGGTT TTGACCTCCATGCCGCCCACCCCCGGTGCCTGGCAGGCAGGTGGTTGGCAAATCCTGCTGGCGCTGGTGCTGGGTGCGGC GACCATCGCAGCCGCAATCTACAGCTATCGGGTGATGGCGGCGGGCAAGGCGCGCACGCTGACCCTGCTTGCAATCCTGA TCGTGGGATTTGTGGTTTACCGCGCAGCGCTGGATCCCGGTGTTGAAGCCATCGAGTCGATCAACCCCGCGCTTGAGGGC AACATTGGCGGCTTTGGCCTGCCCGTGCTCCTGGCCTGGCCGCTGGGCGGTCTGCTGGCGGCGGGTGTTGCGTGGATGAT CGGCAAGACAGCGCTGGGGCTGCGGTCGGACTATCTGGCGATCGCAACACTTGGCATTGCCGAGATCATCATTGCGGTGC TGAAGAACGAGGACTGGCTGTCCCGAGGGGTCAAAAACGTCGTCGGCTTGCCGCGCCCCCTGCCCTATGAGGTTGATTTG CAAGCAGATCCTGCGTTCGTGAACCAGGCTGCGGCTTGGGGCATGGATGCCACCACGGCCTCCACGCTCTACGTGAAACT GGGCTATGCGCTCATGTTCACGGTCGTGCTGCTGGTCTTCCTCTGGATGGCACAAATGGCGCTCAAGAGCCCCTGGGGGC GGATGATGCGCGCCATTCGGGACAATGAAGTGGCCGCCAACGCCATGGGCAAACATGTCACCCGGCGCCATCTGCAGGTC TTCATCCTTGGTTCGGCCATTTGCGGCGTGGCTGGTGCGATGATGACGACGCTCGACAGCCAGTTGACACCCGGCACCTA CAACCCGCTGCGGTTTACCTTCCTCATCTGGGTGATGGTGATCGTCGGAGGCTCCGGTAACAACTTCGGCGCGGTGCTTG GCGGGCTCTTGGTGTGGTTCCTGTGGATCAAGGTGGAGCCGATGGGCGTGATGCTGATCGAGCTTGTGACCTCTGGCATG TCCGAGGACAGCGGACTGCGCGCACATCTTCTGGAGAGTGCCTCACATATGCGCCTGTTCACCATGGGGCTGGTCTTGCT GCTGGTGCTCCGGTTTAGCCCAAGGGGTCTGATCCCGGAGAAATAA
Upstream 100 bases:
>100_bases CACAGCTTCTGAGCACGGATTACAAATTTGCGGTTTCCTTTGCGATCCTCGTCGTTGTGCTGCTGTTCAAACCCACCGGT ATCTTCAAAGGAAAAGCGGT
Downstream 100 bases:
>100_bases CCTCGGCAAGCCTGCCAACTTGAAGACAAACAAAAACGCCTGTCGAAATATTCGGCAGGCGTTTTCAATTTCCCGAGAGC CTTAATCCCGAAGCTTTGTA
Product: inner-membrane translocator
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 441; Mature: 440
Protein sequence:
>441_residues MSDTLKHTLLFAFVGLLLVLEGTTNAFGVFSGSWNSALTILNMGLISAIMAIGVNLQWGFAGLFNVGIMGFTALGGLAVV LTSMPPTPGAWQAGGWQILLALVLGAATIAAAIYSYRVMAAGKARTLTLLAILIVGFVVYRAALDPGVEAIESINPALEG NIGGFGLPVLLAWPLGGLLAAGVAWMIGKTALGLRSDYLAIATLGIAEIIIAVLKNEDWLSRGVKNVVGLPRPLPYEVDL QADPAFVNQAAAWGMDATTASTLYVKLGYALMFTVVLLVFLWMAQMALKSPWGRMMRAIRDNEVAANAMGKHVTRRHLQV FILGSAICGVAGAMMTTLDSQLTPGTYNPLRFTFLIWVMVIVGGSGNNFGAVLGGLLVWFLWIKVEPMGVMLIELVTSGM SEDSGLRAHLLESASHMRLFTMGLVLLLVLRFSPRGLIPEK
Sequences:
>Translated_441_residues MSDTLKHTLLFAFVGLLLVLEGTTNAFGVFSGSWNSALTILNMGLISAIMAIGVNLQWGFAGLFNVGIMGFTALGGLAVV LTSMPPTPGAWQAGGWQILLALVLGAATIAAAIYSYRVMAAGKARTLTLLAILIVGFVVYRAALDPGVEAIESINPALEG NIGGFGLPVLLAWPLGGLLAAGVAWMIGKTALGLRSDYLAIATLGIAEIIIAVLKNEDWLSRGVKNVVGLPRPLPYEVDL QADPAFVNQAAAWGMDATTASTLYVKLGYALMFTVVLLVFLWMAQMALKSPWGRMMRAIRDNEVAANAMGKHVTRRHLQV FILGSAICGVAGAMMTTLDSQLTPGTYNPLRFTFLIWVMVIVGGSGNNFGAVLGGLLVWFLWIKVEPMGVMLIELVTSGM SEDSGLRAHLLESASHMRLFTMGLVLLLVLRFSPRGLIPEK >Mature_440_residues SDTLKHTLLFAFVGLLLVLEGTTNAFGVFSGSWNSALTILNMGLISAIMAIGVNLQWGFAGLFNVGIMGFTALGGLAVVL TSMPPTPGAWQAGGWQILLALVLGAATIAAAIYSYRVMAAGKARTLTLLAILIVGFVVYRAALDPGVEAIESINPALEGN IGGFGLPVLLAWPLGGLLAAGVAWMIGKTALGLRSDYLAIATLGIAEIIIAVLKNEDWLSRGVKNVVGLPRPLPYEVDLQ ADPAFVNQAAAWGMDATTASTLYVKLGYALMFTVVLLVFLWMAQMALKSPWGRMMRAIRDNEVAANAMGKHVTRRHLQVF ILGSAICGVAGAMMTTLDSQLTPGTYNPLRFTFLIWVMVIVGGSGNNFGAVLGGLLVWFLWIKVEPMGVMLIELVTSGMS EDSGLRAHLLESASHMRLFTMGLVLLLVLRFSPRGLIPEK
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG4177
COG function: function code E; ABC-type branched-chain amino acid transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789865, Length=283, Percent_Identity=25.7950530035336, Blast_Score=77, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 - InterPro: IPR021807 [H]
Pfam domain/function: PF02653 BPD_transp_2; PF11862 DUF3382 [H]
EC number: NA
Molecular weight: Translated: 46920; Mature: 46788
Theoretical pI: Translated: 9.27; Mature: 9.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTLKHTLLFAFVGLLLVLEGTTNAFGVFSGSWNSALTILNMGLISAIMAIGVNLQWGF CCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCH AGLFNVGIMGFTALGGLAVVLTSMPPTPGAWQAGGWQILLALVLGAATIAAAIYSYRVMA HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC AGKARTLTLLAILIVGFVVYRAALDPGVEAIESINPALEGNIGGFGLPVLLAWPLGGLLA CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHHH AGVAWMIGKTALGLRSDYLAIATLGIAEIIIAVLKNEDWLSRGVKNVVGLPRPLPYEVDL HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEC QADPAFVNQAAAWGMDATTASTLYVKLGYALMFTVVLLVFLWMAQMALKSPWGRMMRAIR CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH DNEVAANAMGKHVTRRHLQVFILGSAICGVAGAMMTTLDSQLTPGTYNPLRFTFLIWVMV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH IVGGSGNNFGAVLGGLLVWFLWIKVEPMGVMLIELVTSGMSEDSGLRAHLLESASHMRLF HHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH TMGLVLLLVLRFSPRGLIPEK HHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure SDTLKHTLLFAFVGLLLVLEGTTNAFGVFSGSWNSALTILNMGLISAIMAIGVNLQWGF CCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCH AGLFNVGIMGFTALGGLAVVLTSMPPTPGAWQAGGWQILLALVLGAATIAAAIYSYRVMA HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC AGKARTLTLLAILIVGFVVYRAALDPGVEAIESINPALEGNIGGFGLPVLLAWPLGGLLA CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHHH AGVAWMIGKTALGLRSDYLAIATLGIAEIIIAVLKNEDWLSRGVKNVVGLPRPLPYEVDL HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEC QADPAFVNQAAAWGMDATTASTLYVKLGYALMFTVVLLVFLWMAQMALKSPWGRMMRAIR CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH DNEVAANAMGKHVTRRHLQVFILGSAICGVAGAMMTTLDSQLTPGTYNPLRFTFLIWVMV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH IVGGSGNNFGAVLGGLLVWFLWIKVEPMGVMLIELVTSGMSEDSGLRAHLLESASHMRLF HHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH TMGLVLLLVLRFSPRGLIPEK HHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043 [H]