Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081148

Identifier: 99081148

GI number: 99081148

Start: 1398593

End: 1399195

Strand: Direct

Name: 99081148

Synonym: TM1040_1307

Alternate gene names: NA

Gene position: 1398593-1399195 (Clockwise)

Preceding gene: 99081117

Following gene: 99081149

Centisome position: 43.69

GC content: 45.77

Gene sequence:

>603_bases
GTGAGCAAAGAGATTATTAATATAAGTAACTTAGCATCCGTTGACGAAACAGAGCTAGTCCTCGTGCAGAGTATGGTTGC
TGAGCTATTCGGTGAACCGCATCAACTTGTAAATCTTCAGGGAGCTTATTTCGGGCCTCGTCGATATCCACACACGGTCT
ATCTATCTGAGGCGGATCGATTTTGTGTGGCGATTTTAATTCCTAGTCACCAAGCTGATAAGCTTGCTTTCCGCGTCGCG
CATCTCTCGCACGAACTAGTACACTGCTTGAACCCTAATGGATGGCCCTCCAAGGCGACAATACTCGAAGAAGGGCTCGC
AGAGCACGCGAAAGTCTATATATCGCGTGTGATGTACGAGGGCTTTCCTCAACTCGGTGCTAACATACAGACGTATGGTG
CATACCAAGAAGCATTTGATCGGATCGAGGATCTAATCAAATACGAAGGTCTTAAAGGTTTTTATAGTGGAATTAGAAAA
CTGAGAGAAGACACATGCCGTCCGTTCGCGGAGATCAAAGCAGAAGATTTGAAGAAGGTGTTCTTGAACACACCTGTCGA
ACTCTTGGAACTTCTAAGTCAGCCATTTCGCGAGTTAGATTAG

Upstream 100 bases:

>100_bases
TAAACAATAATAGCGTGGAGTTTGGAGGTTTTATTCCCTAACATAAAACTCCCCAATAGAATGTCGCAACCGGTGTGATT
GGTGTGAATGAGGATTTCGT

Downstream 100 bases:

>100_bases
TCTCCTTTATCCCCGCCCCGGTTCTGCTGATGTGAGAATAAAAAATGAAGCGTGACGACGACTACATTAGAAGAATGTTG
TTAGCTTTAGAGCTCGCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MSKEIINISNLASVDETELVLVQSMVAELFGEPHQLVNLQGAYFGPRRYPHTVYLSEADRFCVAILIPSHQADKLAFRVA
HLSHELVHCLNPNGWPSKATILEEGLAEHAKVYISRVMYEGFPQLGANIQTYGAYQEAFDRIEDLIKYEGLKGFYSGIRK
LREDTCRPFAEIKAEDLKKVFLNTPVELLELLSQPFRELD

Sequences:

>Translated_200_residues
MSKEIINISNLASVDETELVLVQSMVAELFGEPHQLVNLQGAYFGPRRYPHTVYLSEADRFCVAILIPSHQADKLAFRVA
HLSHELVHCLNPNGWPSKATILEEGLAEHAKVYISRVMYEGFPQLGANIQTYGAYQEAFDRIEDLIKYEGLKGFYSGIRK
LREDTCRPFAEIKAEDLKKVFLNTPVELLELLSQPFRELD
>Mature_199_residues
SKEIINISNLASVDETELVLVQSMVAELFGEPHQLVNLQGAYFGPRRYPHTVYLSEADRFCVAILIPSHQADKLAFRVAH
LSHELVHCLNPNGWPSKATILEEGLAEHAKVYISRVMYEGFPQLGANIQTYGAYQEAFDRIEDLIKYEGLKGFYSGIRKL
REDTCRPFAEIKAEDLKKVFLNTPVELLELLSQPFRELD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22754; Mature: 22623

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKEIINISNLASVDETELVLVQSMVAELFGEPHQLVNLQGAYFGPRRYPHTVYLSEADR
CCCCEECHHHHCCCCHHHHHHHHHHHHHHCCCCHHHEECCCCCCCCCCCCCEEEEECCCC
FCVAILIPSHQADKLAFRVAHLSHELVHCLNPNGWPSKATILEEGLAEHAKVYISRVMYE
EEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GFPQLGANIQTYGAYQEAFDRIEDLIKYEGLKGFYSGIRKLREDTCRPFAEIKAEDLKKV
CCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
FLNTPVELLELLSQPFRELD
HHCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKEIINISNLASVDETELVLVQSMVAELFGEPHQLVNLQGAYFGPRRYPHTVYLSEADR
CCCEECHHHHCCCCHHHHHHHHHHHHHHCCCCHHHEECCCCCCCCCCCCCEEEEECCCC
FCVAILIPSHQADKLAFRVAHLSHELVHCLNPNGWPSKATILEEGLAEHAKVYISRVMYE
EEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GFPQLGANIQTYGAYQEAFDRIEDLIKYEGLKGFYSGIRKLREDTCRPFAEIKAEDLKKV
CCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
FLNTPVELLELLSQPFRELD
HHCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA