The gene/protein map for NC_008044 is currently unavailable.
Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081067

Identifier: 99081067

GI number: 99081067

Start: 1318425

End: 1320509

Strand: Direct

Name: 99081067

Synonym: TM1040_1226

Alternate gene names: NA

Gene position: 1318425-1320509 (Clockwise)

Preceding gene: 99081066

Following gene: 99081068

Centisome position: 41.19

GC content: 60.91

Gene sequence:

>2085_bases
ATGCTTCGCATCAACTGCGCAGAATTAAAGGCTAAAGACATGTCGAACGATCCCCTCGTCGTGTTCACCCCCTCCGGCAA
ACGCGGACGTTTTCCAGTTGGCACTCCGGTGCTGACGGCGGCGCGCCAGCTGGGGGTCGATCTTGATTCCGTTTGTGGTG
GGCGGGGCATCTGCTCCAAATGCCAGATCACGCCGTCTTATGGTGAATTCTCGAAACACGGTGTCACCGTGGCCGATGAC
GCCCTGTCGGAATGGAACAAGGTCGAGCAGCGCTATAAGGACAAGCGCGGTCTGATCGACGGGCGCCGTCTGGGCTGTCA
GGCGAAGATCGAAAAAGACGTGGTGATCGACGTCCCGGCCGAGAGCCAGGTCCACAAGCAAGTGGTTCGCAAGCGGGCCG
AGGCGCGCGACATCGTCATGAACCCCTCAATCCGCCTGTATTATGTCGAGGTAGAAGAACCGGATATGCACAAGCCCACC
GGCGACTTGGAGCGTCTGTGTGAGGGGCTTGAGAAGCAGTGGAATATCAAGGGCGTAAAAGCCGATTTTGAGGTTCTTAG
AGAGCTGCAGCCGACCCTGCGCAAAGGCGGCTGGACGGTGACGGTCGCGGTGCAACTGGGGACTGAGACCGCGCCTGCGC
GCATCATGCAGATCTGGCCGGGCTACTATGAAGGTACGGTTTACGGGCTGGCGGTGGACCTTGGCTCTACCACCATTGCG
GCGCATCTGTGCGATCTCAAAACCGGCGAGGTTCTGGCGTCCTCGGGGATCATGAACCCGCAGATCCGCTTTGGCGAAGA
TCTGATGAGCCGGGTGTCTTATGCTATGATGAACAAGGGCGGTGATCTGGAGATGACCCGCGCCGTGCGTGAAGGGATGA
ACGCGCTCTTTTCGCAGATTTCAGAAGAGGCGCAGATTGATCAGGGGCTGATCATGGACGCGGTCTTTGTCTGCAACCCC
GTCATGCATCACCTGTTTCTCGGAATCGATCCCTTTGAACTTGGACAGGCACCCTTTGCGCTGGCCACATCGGACGCCTT
GGCGCTGCAAGCGCGCGATCTGGATCTGAAACTTCACCGTGCGGCGCGGATCTATCTGTTGCCCTGTATCGCGGGACACG
TCGGCGCGGATGCAGCGGCCGTCGCCCTCTCTGAGGCACCGGATAAATCCGATGACCTCGTGCTCGTTGTCGATGTGGGA
ACAAATGCCGAGATCCTATTGGGAAACAAGGATAAAGTGCTGGCGTGCTCTTCGCCAACGGGCCCTGCCTTTGAGGGGGC
GCAGATTTCCTCCGGCCAGCGTGCAGCCCCCGGTGCCATCGAACGTGTCGAGATCGATCCCGTCACCAAAGAGCCTCGGT
TCCGTGTCATCGGGTCCGAGATCTGGTCGGATCAGGACGGGTTTGAGCAGAGCATCGCAACCACCGGGATCACCGGCATC
TGCGGCTCTGGCATCATCGAGGCCATCGCAGAGATGCGGCTGGCTGGTGTATTGGATGCCTCGGGTCTGATCGGATCCGC
CGAGCAGACCGGAAGCGCGCGGTGTGTCCCCGAAGGTCGCACCAATGCCTATCTCCTGTGGGACGCAACCGCAGAGGGGG
GGCCACGCATTACAGTCACCAATCCCGACATCCGGGCGATCCAGATGGCCAAGGCGGCGCTCTATTCCGGGGCGCGGCTG
CTGATGGACAAGATCGGCGTGGATCAGGTGGACCGCGTGGTTCTCGCGGGGGCCTTTGGCGCGCATATCTCGGCCAAACA
TGCGATGGTGCTGGGCATGATCCCCGATTGCCCCCTCGACAAGGTGACAAGCGCAGGCAACGCGGCGGGAACGGGCGCGC
GGATTGCGCTCCTCAACACTGACGCGCGTCAAGAGATCGAAGATACCGTGCGCAAGATCGAGAAAGTCGAAACCGCTGTC
GAGCCACGTTTCCAGGAGCATTTTGTCAATGCTTCTGCAATTCCGAACTCCGCCGAGCCTTTCCCGATCCTGCAAAGCGT
GGTGAGCCTGCCGGAGGTGAGCTTCAACTCCGCCGGGGCAGACGCCGCCCGCAGCGGTGGTCGGCGCAGGCGCCGCGGCG
GCTGA

Upstream 100 bases:

>100_bases
TGGCTGAGAGAGGCCTGAGGTCTCTCGGGTATTTTGCGCAAATGCCGCCGTTGGAACAGAAAACGGCGGTGTTCGACGTT
CTCGCGCCTGAAACTGCCAT

Downstream 100 bases:

>100_bases
GGAATAGGTCATCGCCATCGGTGTTGAAACCGCTTGTGGCGTGCCCGGCGCGGGCGTTAGAGAGGCATCCAAACGGAAAC
CGCGCCGGCAATCTGCATGG

Product: ferredoxin

Products: NA

Alternate protein names: Electron Transfer Protein; Vitamin; Corrinoid Activation/Regeneration Protein; Ferredoxin Domain-Containing Protein; Iron-Sulfur Protein; Ferredoxin-Containing Protein; ATP Synthase F0 A Subunit; Activating

Number of amino acids: Translated: 694; Mature: 694

Protein sequence:

>694_residues
MLRINCAELKAKDMSNDPLVVFTPSGKRGRFPVGTPVLTAARQLGVDLDSVCGGRGICSKCQITPSYGEFSKHGVTVADD
ALSEWNKVEQRYKDKRGLIDGRRLGCQAKIEKDVVIDVPAESQVHKQVVRKRAEARDIVMNPSIRLYYVEVEEPDMHKPT
GDLERLCEGLEKQWNIKGVKADFEVLRELQPTLRKGGWTVTVAVQLGTETAPARIMQIWPGYYEGTVYGLAVDLGSTTIA
AHLCDLKTGEVLASSGIMNPQIRFGEDLMSRVSYAMMNKGGDLEMTRAVREGMNALFSQISEEAQIDQGLIMDAVFVCNP
VMHHLFLGIDPFELGQAPFALATSDALALQARDLDLKLHRAARIYLLPCIAGHVGADAAAVALSEAPDKSDDLVLVVDVG
TNAEILLGNKDKVLACSSPTGPAFEGAQISSGQRAAPGAIERVEIDPVTKEPRFRVIGSEIWSDQDGFEQSIATTGITGI
CGSGIIEAIAEMRLAGVLDASGLIGSAEQTGSARCVPEGRTNAYLLWDATAEGGPRITVTNPDIRAIQMAKAALYSGARL
LMDKIGVDQVDRVVLAGAFGAHISAKHAMVLGMIPDCPLDKVTSAGNAAGTGARIALLNTDARQEIEDTVRKIEKVETAV
EPRFQEHFVNASAIPNSAEPFPILQSVVSLPEVSFNSAGADAARSGGRRRRRGG

Sequences:

>Translated_694_residues
MLRINCAELKAKDMSNDPLVVFTPSGKRGRFPVGTPVLTAARQLGVDLDSVCGGRGICSKCQITPSYGEFSKHGVTVADD
ALSEWNKVEQRYKDKRGLIDGRRLGCQAKIEKDVVIDVPAESQVHKQVVRKRAEARDIVMNPSIRLYYVEVEEPDMHKPT
GDLERLCEGLEKQWNIKGVKADFEVLRELQPTLRKGGWTVTVAVQLGTETAPARIMQIWPGYYEGTVYGLAVDLGSTTIA
AHLCDLKTGEVLASSGIMNPQIRFGEDLMSRVSYAMMNKGGDLEMTRAVREGMNALFSQISEEAQIDQGLIMDAVFVCNP
VMHHLFLGIDPFELGQAPFALATSDALALQARDLDLKLHRAARIYLLPCIAGHVGADAAAVALSEAPDKSDDLVLVVDVG
TNAEILLGNKDKVLACSSPTGPAFEGAQISSGQRAAPGAIERVEIDPVTKEPRFRVIGSEIWSDQDGFEQSIATTGITGI
CGSGIIEAIAEMRLAGVLDASGLIGSAEQTGSARCVPEGRTNAYLLWDATAEGGPRITVTNPDIRAIQMAKAALYSGARL
LMDKIGVDQVDRVVLAGAFGAHISAKHAMVLGMIPDCPLDKVTSAGNAAGTGARIALLNTDARQEIEDTVRKIEKVETAV
EPRFQEHFVNASAIPNSAEPFPILQSVVSLPEVSFNSAGADAARSGGRRRRRGG
>Mature_694_residues
MLRINCAELKAKDMSNDPLVVFTPSGKRGRFPVGTPVLTAARQLGVDLDSVCGGRGICSKCQITPSYGEFSKHGVTVADD
ALSEWNKVEQRYKDKRGLIDGRRLGCQAKIEKDVVIDVPAESQVHKQVVRKRAEARDIVMNPSIRLYYVEVEEPDMHKPT
GDLERLCEGLEKQWNIKGVKADFEVLRELQPTLRKGGWTVTVAVQLGTETAPARIMQIWPGYYEGTVYGLAVDLGSTTIA
AHLCDLKTGEVLASSGIMNPQIRFGEDLMSRVSYAMMNKGGDLEMTRAVREGMNALFSQISEEAQIDQGLIMDAVFVCNP
VMHHLFLGIDPFELGQAPFALATSDALALQARDLDLKLHRAARIYLLPCIAGHVGADAAAVALSEAPDKSDDLVLVVDVG
TNAEILLGNKDKVLACSSPTGPAFEGAQISSGQRAAPGAIERVEIDPVTKEPRFRVIGSEIWSDQDGFEQSIATTGITGI
CGSGIIEAIAEMRLAGVLDASGLIGSAEQTGSARCVPEGRTNAYLLWDATAEGGPRITVTNPDIRAIQMAKAALYSGARL
LMDKIGVDQVDRVVLAGAFGAHISAKHAMVLGMIPDCPLDKVTSAGNAAGTGARIALLNTDARQEIEDTVRKIEKVETAV
EPRFQEHFVNASAIPNSAEPFPILQSVVSLPEVSFNSAGADAARSGGRRRRRGG

Specific function: Unknown

COG id: COG3894

COG function: function code R; Uncharacterized metal-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 74465; Mature: 74465

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRINCAELKAKDMSNDPLVVFTPSGKRGRFPVGTPVLTAARQLGVDLDSVCGGRGICSK
CEEEEHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCC
CQITPSYGEFSKHGVTVADDALSEWNKVEQRYKDKRGLIDGRRLGCQAKIEKDVVIDVPA
CEECCCCCCHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCCHHCCCEEECCCCEEEECCC
ESQVHKQVVRKRAEARDIVMNPSIRLYYVEVEEPDMHKPTGDLERLCEGLEKQWNIKGVK
CHHHHHHHHHHHHHHCCEEECCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
ADFEVLRELQPTLRKGGWTVTVAVQLGTETAPARIMQIWPGYYEGTVYGLAVDLGSTTIA
HHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHCCCCCCCEEEEEEEECCCHHHH
AHLCDLKTGEVLASSGIMNPQIRFGEDLMSRVSYAMMNKGGDLEMTRAVREGMNALFSQI
HHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
SEEAQIDQGLIMDAVFVCNPVMHHLFLGIDPFELGQAPFALATSDALALQARDLDLKLHR
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEECCCEEEEEECCCCEEEEC
AARIYLLPCIAGHVGADAAAVALSEAPDKSDDLVLVVDVGTNAEILLGNKDKVLACSSPT
CEEEEEEEHHHCCCCCCHHHEEECCCCCCCCCEEEEEECCCCCEEEECCCCCEEEECCCC
GPAFEGAQISSGQRAAPGAIERVEIDPVTKEPRFRVIGSEIWSDQDGFEQSIATTGITGI
CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECHHHCCCCCCHHHHHHHCCCHHH
CGSGIIEAIAEMRLAGVLDASGLIGSAEQTGSARCVPEGRTNAYLLWDATAEGGPRITVT
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCEEEEE
NPDIRAIQMAKAALYSGARLLMDKIGVDQVDRVVLAGAFGAHISAKHAMVLGMIPDCPLD
CCCHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHEECCCCCCCCCCEEEEECCCCCCHH
KVTSAGNAAGTGARIALLNTDARQEIEDTVRKIEKVETAVEPRFQEHFVNASAIPNSAEP
HHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCC
FPILQSVVSLPEVSFNSAGADAARSGGRRRRRGG
HHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCC
>Mature Secondary Structure
MLRINCAELKAKDMSNDPLVVFTPSGKRGRFPVGTPVLTAARQLGVDLDSVCGGRGICSK
CEEEEHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCC
CQITPSYGEFSKHGVTVADDALSEWNKVEQRYKDKRGLIDGRRLGCQAKIEKDVVIDVPA
CEECCCCCCHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCCHHCCCEEECCCCEEEECCC
ESQVHKQVVRKRAEARDIVMNPSIRLYYVEVEEPDMHKPTGDLERLCEGLEKQWNIKGVK
CHHHHHHHHHHHHHHCCEEECCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
ADFEVLRELQPTLRKGGWTVTVAVQLGTETAPARIMQIWPGYYEGTVYGLAVDLGSTTIA
HHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHCCCCCCCEEEEEEEECCCHHHH
AHLCDLKTGEVLASSGIMNPQIRFGEDLMSRVSYAMMNKGGDLEMTRAVREGMNALFSQI
HHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
SEEAQIDQGLIMDAVFVCNPVMHHLFLGIDPFELGQAPFALATSDALALQARDLDLKLHR
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEECCCEEEEEECCCCEEEEC
AARIYLLPCIAGHVGADAAAVALSEAPDKSDDLVLVVDVGTNAEILLGNKDKVLACSSPT
CEEEEEEEHHHCCCCCCHHHEEECCCCCCCCCEEEEEECCCCCEEEECCCCCEEEECCCC
GPAFEGAQISSGQRAAPGAIERVEIDPVTKEPRFRVIGSEIWSDQDGFEQSIATTGITGI
CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECHHHCCCCCCHHHHHHHCCCHHH
CGSGIIEAIAEMRLAGVLDASGLIGSAEQTGSARCVPEGRTNAYLLWDATAEGGPRITVT
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCEEEEE
NPDIRAIQMAKAALYSGARLLMDKIGVDQVDRVVLAGAFGAHISAKHAMVLGMIPDCPLD
CCCHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHEECCCCCCCCCCEEEEECCCCCCHH
KVTSAGNAAGTGARIALLNTDARQEIEDTVRKIEKVETAVEPRFQEHFVNASAIPNSAEP
HHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCC
FPILQSVVSLPEVSFNSAGADAARSGGRRRRRGG
HHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA