| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081067
Identifier: 99081067
GI number: 99081067
Start: 1318425
End: 1320509
Strand: Direct
Name: 99081067
Synonym: TM1040_1226
Alternate gene names: NA
Gene position: 1318425-1320509 (Clockwise)
Preceding gene: 99081066
Following gene: 99081068
Centisome position: 41.19
GC content: 60.91
Gene sequence:
>2085_bases ATGCTTCGCATCAACTGCGCAGAATTAAAGGCTAAAGACATGTCGAACGATCCCCTCGTCGTGTTCACCCCCTCCGGCAA ACGCGGACGTTTTCCAGTTGGCACTCCGGTGCTGACGGCGGCGCGCCAGCTGGGGGTCGATCTTGATTCCGTTTGTGGTG GGCGGGGCATCTGCTCCAAATGCCAGATCACGCCGTCTTATGGTGAATTCTCGAAACACGGTGTCACCGTGGCCGATGAC GCCCTGTCGGAATGGAACAAGGTCGAGCAGCGCTATAAGGACAAGCGCGGTCTGATCGACGGGCGCCGTCTGGGCTGTCA GGCGAAGATCGAAAAAGACGTGGTGATCGACGTCCCGGCCGAGAGCCAGGTCCACAAGCAAGTGGTTCGCAAGCGGGCCG AGGCGCGCGACATCGTCATGAACCCCTCAATCCGCCTGTATTATGTCGAGGTAGAAGAACCGGATATGCACAAGCCCACC GGCGACTTGGAGCGTCTGTGTGAGGGGCTTGAGAAGCAGTGGAATATCAAGGGCGTAAAAGCCGATTTTGAGGTTCTTAG AGAGCTGCAGCCGACCCTGCGCAAAGGCGGCTGGACGGTGACGGTCGCGGTGCAACTGGGGACTGAGACCGCGCCTGCGC GCATCATGCAGATCTGGCCGGGCTACTATGAAGGTACGGTTTACGGGCTGGCGGTGGACCTTGGCTCTACCACCATTGCG GCGCATCTGTGCGATCTCAAAACCGGCGAGGTTCTGGCGTCCTCGGGGATCATGAACCCGCAGATCCGCTTTGGCGAAGA TCTGATGAGCCGGGTGTCTTATGCTATGATGAACAAGGGCGGTGATCTGGAGATGACCCGCGCCGTGCGTGAAGGGATGA ACGCGCTCTTTTCGCAGATTTCAGAAGAGGCGCAGATTGATCAGGGGCTGATCATGGACGCGGTCTTTGTCTGCAACCCC GTCATGCATCACCTGTTTCTCGGAATCGATCCCTTTGAACTTGGACAGGCACCCTTTGCGCTGGCCACATCGGACGCCTT GGCGCTGCAAGCGCGCGATCTGGATCTGAAACTTCACCGTGCGGCGCGGATCTATCTGTTGCCCTGTATCGCGGGACACG TCGGCGCGGATGCAGCGGCCGTCGCCCTCTCTGAGGCACCGGATAAATCCGATGACCTCGTGCTCGTTGTCGATGTGGGA ACAAATGCCGAGATCCTATTGGGAAACAAGGATAAAGTGCTGGCGTGCTCTTCGCCAACGGGCCCTGCCTTTGAGGGGGC GCAGATTTCCTCCGGCCAGCGTGCAGCCCCCGGTGCCATCGAACGTGTCGAGATCGATCCCGTCACCAAAGAGCCTCGGT TCCGTGTCATCGGGTCCGAGATCTGGTCGGATCAGGACGGGTTTGAGCAGAGCATCGCAACCACCGGGATCACCGGCATC TGCGGCTCTGGCATCATCGAGGCCATCGCAGAGATGCGGCTGGCTGGTGTATTGGATGCCTCGGGTCTGATCGGATCCGC CGAGCAGACCGGAAGCGCGCGGTGTGTCCCCGAAGGTCGCACCAATGCCTATCTCCTGTGGGACGCAACCGCAGAGGGGG GGCCACGCATTACAGTCACCAATCCCGACATCCGGGCGATCCAGATGGCCAAGGCGGCGCTCTATTCCGGGGCGCGGCTG CTGATGGACAAGATCGGCGTGGATCAGGTGGACCGCGTGGTTCTCGCGGGGGCCTTTGGCGCGCATATCTCGGCCAAACA TGCGATGGTGCTGGGCATGATCCCCGATTGCCCCCTCGACAAGGTGACAAGCGCAGGCAACGCGGCGGGAACGGGCGCGC GGATTGCGCTCCTCAACACTGACGCGCGTCAAGAGATCGAAGATACCGTGCGCAAGATCGAGAAAGTCGAAACCGCTGTC GAGCCACGTTTCCAGGAGCATTTTGTCAATGCTTCTGCAATTCCGAACTCCGCCGAGCCTTTCCCGATCCTGCAAAGCGT GGTGAGCCTGCCGGAGGTGAGCTTCAACTCCGCCGGGGCAGACGCCGCCCGCAGCGGTGGTCGGCGCAGGCGCCGCGGCG GCTGA
Upstream 100 bases:
>100_bases TGGCTGAGAGAGGCCTGAGGTCTCTCGGGTATTTTGCGCAAATGCCGCCGTTGGAACAGAAAACGGCGGTGTTCGACGTT CTCGCGCCTGAAACTGCCAT
Downstream 100 bases:
>100_bases GGAATAGGTCATCGCCATCGGTGTTGAAACCGCTTGTGGCGTGCCCGGCGCGGGCGTTAGAGAGGCATCCAAACGGAAAC CGCGCCGGCAATCTGCATGG
Product: ferredoxin
Products: NA
Alternate protein names: Electron Transfer Protein; Vitamin; Corrinoid Activation/Regeneration Protein; Ferredoxin Domain-Containing Protein; Iron-Sulfur Protein; Ferredoxin-Containing Protein; ATP Synthase F0 A Subunit; Activating
Number of amino acids: Translated: 694; Mature: 694
Protein sequence:
>694_residues MLRINCAELKAKDMSNDPLVVFTPSGKRGRFPVGTPVLTAARQLGVDLDSVCGGRGICSKCQITPSYGEFSKHGVTVADD ALSEWNKVEQRYKDKRGLIDGRRLGCQAKIEKDVVIDVPAESQVHKQVVRKRAEARDIVMNPSIRLYYVEVEEPDMHKPT GDLERLCEGLEKQWNIKGVKADFEVLRELQPTLRKGGWTVTVAVQLGTETAPARIMQIWPGYYEGTVYGLAVDLGSTTIA AHLCDLKTGEVLASSGIMNPQIRFGEDLMSRVSYAMMNKGGDLEMTRAVREGMNALFSQISEEAQIDQGLIMDAVFVCNP VMHHLFLGIDPFELGQAPFALATSDALALQARDLDLKLHRAARIYLLPCIAGHVGADAAAVALSEAPDKSDDLVLVVDVG TNAEILLGNKDKVLACSSPTGPAFEGAQISSGQRAAPGAIERVEIDPVTKEPRFRVIGSEIWSDQDGFEQSIATTGITGI CGSGIIEAIAEMRLAGVLDASGLIGSAEQTGSARCVPEGRTNAYLLWDATAEGGPRITVTNPDIRAIQMAKAALYSGARL LMDKIGVDQVDRVVLAGAFGAHISAKHAMVLGMIPDCPLDKVTSAGNAAGTGARIALLNTDARQEIEDTVRKIEKVETAV EPRFQEHFVNASAIPNSAEPFPILQSVVSLPEVSFNSAGADAARSGGRRRRRGG
Sequences:
>Translated_694_residues MLRINCAELKAKDMSNDPLVVFTPSGKRGRFPVGTPVLTAARQLGVDLDSVCGGRGICSKCQITPSYGEFSKHGVTVADD ALSEWNKVEQRYKDKRGLIDGRRLGCQAKIEKDVVIDVPAESQVHKQVVRKRAEARDIVMNPSIRLYYVEVEEPDMHKPT GDLERLCEGLEKQWNIKGVKADFEVLRELQPTLRKGGWTVTVAVQLGTETAPARIMQIWPGYYEGTVYGLAVDLGSTTIA AHLCDLKTGEVLASSGIMNPQIRFGEDLMSRVSYAMMNKGGDLEMTRAVREGMNALFSQISEEAQIDQGLIMDAVFVCNP VMHHLFLGIDPFELGQAPFALATSDALALQARDLDLKLHRAARIYLLPCIAGHVGADAAAVALSEAPDKSDDLVLVVDVG TNAEILLGNKDKVLACSSPTGPAFEGAQISSGQRAAPGAIERVEIDPVTKEPRFRVIGSEIWSDQDGFEQSIATTGITGI CGSGIIEAIAEMRLAGVLDASGLIGSAEQTGSARCVPEGRTNAYLLWDATAEGGPRITVTNPDIRAIQMAKAALYSGARL LMDKIGVDQVDRVVLAGAFGAHISAKHAMVLGMIPDCPLDKVTSAGNAAGTGARIALLNTDARQEIEDTVRKIEKVETAV EPRFQEHFVNASAIPNSAEPFPILQSVVSLPEVSFNSAGADAARSGGRRRRRGG >Mature_694_residues MLRINCAELKAKDMSNDPLVVFTPSGKRGRFPVGTPVLTAARQLGVDLDSVCGGRGICSKCQITPSYGEFSKHGVTVADD ALSEWNKVEQRYKDKRGLIDGRRLGCQAKIEKDVVIDVPAESQVHKQVVRKRAEARDIVMNPSIRLYYVEVEEPDMHKPT GDLERLCEGLEKQWNIKGVKADFEVLRELQPTLRKGGWTVTVAVQLGTETAPARIMQIWPGYYEGTVYGLAVDLGSTTIA AHLCDLKTGEVLASSGIMNPQIRFGEDLMSRVSYAMMNKGGDLEMTRAVREGMNALFSQISEEAQIDQGLIMDAVFVCNP VMHHLFLGIDPFELGQAPFALATSDALALQARDLDLKLHRAARIYLLPCIAGHVGADAAAVALSEAPDKSDDLVLVVDVG TNAEILLGNKDKVLACSSPTGPAFEGAQISSGQRAAPGAIERVEIDPVTKEPRFRVIGSEIWSDQDGFEQSIATTGITGI CGSGIIEAIAEMRLAGVLDASGLIGSAEQTGSARCVPEGRTNAYLLWDATAEGGPRITVTNPDIRAIQMAKAALYSGARL LMDKIGVDQVDRVVLAGAFGAHISAKHAMVLGMIPDCPLDKVTSAGNAAGTGARIALLNTDARQEIEDTVRKIEKVETAV EPRFQEHFVNASAIPNSAEPFPILQSVVSLPEVSFNSAGADAARSGGRRRRRGG
Specific function: Unknown
COG id: COG3894
COG function: function code R; Uncharacterized metal-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 74465; Mature: 74465
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: PS00307 LECTIN_LEGUME_BETA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRINCAELKAKDMSNDPLVVFTPSGKRGRFPVGTPVLTAARQLGVDLDSVCGGRGICSK CEEEEHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCC CQITPSYGEFSKHGVTVADDALSEWNKVEQRYKDKRGLIDGRRLGCQAKIEKDVVIDVPA CEECCCCCCHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCCHHCCCEEECCCCEEEECCC ESQVHKQVVRKRAEARDIVMNPSIRLYYVEVEEPDMHKPTGDLERLCEGLEKQWNIKGVK CHHHHHHHHHHHHHHCCEEECCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC ADFEVLRELQPTLRKGGWTVTVAVQLGTETAPARIMQIWPGYYEGTVYGLAVDLGSTTIA HHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHCCCCCCCEEEEEEEECCCHHHH AHLCDLKTGEVLASSGIMNPQIRFGEDLMSRVSYAMMNKGGDLEMTRAVREGMNALFSQI HHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH SEEAQIDQGLIMDAVFVCNPVMHHLFLGIDPFELGQAPFALATSDALALQARDLDLKLHR HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEECCCEEEEEECCCCEEEEC AARIYLLPCIAGHVGADAAAVALSEAPDKSDDLVLVVDVGTNAEILLGNKDKVLACSSPT CEEEEEEEHHHCCCCCCHHHEEECCCCCCCCCEEEEEECCCCCEEEECCCCCEEEECCCC GPAFEGAQISSGQRAAPGAIERVEIDPVTKEPRFRVIGSEIWSDQDGFEQSIATTGITGI CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECHHHCCCCCCHHHHHHHCCCHHH CGSGIIEAIAEMRLAGVLDASGLIGSAEQTGSARCVPEGRTNAYLLWDATAEGGPRITVT HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCEEEEE NPDIRAIQMAKAALYSGARLLMDKIGVDQVDRVVLAGAFGAHISAKHAMVLGMIPDCPLD CCCHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHEECCCCCCCCCCEEEEECCCCCCHH KVTSAGNAAGTGARIALLNTDARQEIEDTVRKIEKVETAVEPRFQEHFVNASAIPNSAEP HHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCC FPILQSVVSLPEVSFNSAGADAARSGGRRRRRGG HHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCC >Mature Secondary Structure MLRINCAELKAKDMSNDPLVVFTPSGKRGRFPVGTPVLTAARQLGVDLDSVCGGRGICSK CEEEEHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCC CQITPSYGEFSKHGVTVADDALSEWNKVEQRYKDKRGLIDGRRLGCQAKIEKDVVIDVPA CEECCCCCCHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCCHHCCCEEECCCCEEEECCC ESQVHKQVVRKRAEARDIVMNPSIRLYYVEVEEPDMHKPTGDLERLCEGLEKQWNIKGVK CHHHHHHHHHHHHHHCCEEECCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC ADFEVLRELQPTLRKGGWTVTVAVQLGTETAPARIMQIWPGYYEGTVYGLAVDLGSTTIA HHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHCCCCCCCEEEEEEEECCCHHHH AHLCDLKTGEVLASSGIMNPQIRFGEDLMSRVSYAMMNKGGDLEMTRAVREGMNALFSQI HHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH SEEAQIDQGLIMDAVFVCNPVMHHLFLGIDPFELGQAPFALATSDALALQARDLDLKLHR HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEECCCEEEEEECCCCEEEEC AARIYLLPCIAGHVGADAAAVALSEAPDKSDDLVLVVDVGTNAEILLGNKDKVLACSSPT CEEEEEEEHHHCCCCCCHHHEEECCCCCCCCCEEEEEECCCCCEEEECCCCCEEEECCCC GPAFEGAQISSGQRAAPGAIERVEIDPVTKEPRFRVIGSEIWSDQDGFEQSIATTGITGI CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECHHHCCCCCCHHHHHHHCCCHHH CGSGIIEAIAEMRLAGVLDASGLIGSAEQTGSARCVPEGRTNAYLLWDATAEGGPRITVT HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCEEEEE NPDIRAIQMAKAALYSGARLLMDKIGVDQVDRVVLAGAFGAHISAKHAMVLGMIPDCPLD CCCHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHEECCCCCCCCCCEEEEECCCCCCHH KVTSAGNAAGTGARIALLNTDARQEIEDTVRKIEKVETAVEPRFQEHFVNASAIPNSAEP HHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCC FPILQSVVSLPEVSFNSAGADAARSGGRRRRRGG HHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA