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The map label for this gene is yfdE [H]

Identifier: 99081066

GI number: 99081066

Start: 1317194

End: 1318342

Strand: Direct

Name: yfdE [H]

Synonym: TM1040_1225

Alternate gene names: 99081066

Gene position: 1317194-1318342 (Clockwise)

Preceding gene: 99081064

Following gene: 99081067

Centisome position: 41.15

GC content: 59.01

Gene sequence:

>1149_bases
ATGTTAGCCCCCCTCGACGGATTGATCATTCTCGACCTCACACATGTTCTTGCCGGGCCCTATGCCTCCATGACGCTTTC
GGATCTCGGCGCGCGGGTCATCAAGGTGGAACGCCCTGGCGTTGGTGACGACACCCGCGCCTTTCCGCCGTTCAAAGACG
GCGAGAGCGCCTATTTTGCAACCATCAATCATGGCAAGGAAAGCATCGCGCTCGACCTCAAGAATGCCAAGGACCGTATT
GTTTTTGAAGAGCTACTTCAAAAATCGGATGTGGTTCTTGAGAACTATCGCCCCGGTGTGATGGAACGCCTCGGATATGG
TTGGGATGACCTTCACCCCAAGTACCCCAAGCTCATCTATGGTGCGGTTTCCGGCTTTGGTCACAGTGGTCCCGACAGTC
AGCGCCCCGCCTACGACATGGTGGTGCAGGCCCGCGGCGGCGTGATGTCGATCACCGGTGAACGAGACCGCGAACCTGTG
CGCGTGGGCGCCTCTATCGGAGACATCGCCGCCGGTATGTTTCTGGCGCAAGGGATCCTGGCCGCCCTGTTGCAGCGCGA
GAAAACCGGTGAAGGACAAAAGATCGACATTGCCATGCTTGATTGCCAACTCGCCATGCTGGAACATGCAATTGCACTGA
CCACCATAAGCGGCGAGGCGCCCCGGCCCTCGGGGGCAAGACATCCCTCGATTACCCCGTTTGAGACCTTTCATGCGGCA
GATGGGCTGTTTGTAATCGCGGCAGGAAATGACGTTCTGTTTGCCCGGCTCTGCGAGGCATTGGAGTTGCCCATTGCGCA
GGATGAGCGCTTTGCCACCAATCCCGCAAGATGCGAAAATGCGCGCCTTCTCAAGCGGTTGATCGAAGCAGTTACACTGG
AGCATGGCAAACGGCACTGGATCGACCTACTGACCAAAGCTGGGGTGCCCACAGGGCCGATACAGAATGTGGCCGAGGTG
CTGGAGGACCCGCAGATCCGGGCACGCAACATGGTGGTGGATGTGCTCGATCGGGACGGAAACCCGGCCTATGTGGCGGC
AGGCAACCCAATCAAGATGAGCGCGCTCAAGGACCCAAGCACCCGCCCCGCCGCACCCAAGCTGGACGAGAATCGCGAAG
AGATCCTGACGTGGCTGAGAGAGGCCTGA

Upstream 100 bases:

>100_bases
CGCATCGCGGCGGCCTTCGCCCCGCTGGCTGATGCAGATCAAAGAGGTGTTGGATTTGCCGGGTATTGGGTAGGCATATG
GAAAACGCGCGGAGACACCT

Downstream 100 bases:

>100_bases
GGTCTCTCGGGTATTTTGCGCAAATGCCGCCGTTGGAACAGAAAACGGCGGTGTTCGACGTTCTCGCGCCTGAAACTGCC
ATATGCTTCGCATCAACTGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MLAPLDGLIILDLTHVLAGPYASMTLSDLGARVIKVERPGVGDDTRAFPPFKDGESAYFATINHGKESIALDLKNAKDRI
VFEELLQKSDVVLENYRPGVMERLGYGWDDLHPKYPKLIYGAVSGFGHSGPDSQRPAYDMVVQARGGVMSITGERDREPV
RVGASIGDIAAGMFLAQGILAALLQREKTGEGQKIDIAMLDCQLAMLEHAIALTTISGEAPRPSGARHPSITPFETFHAA
DGLFVIAAGNDVLFARLCEALELPIAQDERFATNPARCENARLLKRLIEAVTLEHGKRHWIDLLTKAGVPTGPIQNVAEV
LEDPQIRARNMVVDVLDRDGNPAYVAAGNPIKMSALKDPSTRPAAPKLDENREEILTWLREA

Sequences:

>Translated_382_residues
MLAPLDGLIILDLTHVLAGPYASMTLSDLGARVIKVERPGVGDDTRAFPPFKDGESAYFATINHGKESIALDLKNAKDRI
VFEELLQKSDVVLENYRPGVMERLGYGWDDLHPKYPKLIYGAVSGFGHSGPDSQRPAYDMVVQARGGVMSITGERDREPV
RVGASIGDIAAGMFLAQGILAALLQREKTGEGQKIDIAMLDCQLAMLEHAIALTTISGEAPRPSGARHPSITPFETFHAA
DGLFVIAAGNDVLFARLCEALELPIAQDERFATNPARCENARLLKRLIEAVTLEHGKRHWIDLLTKAGVPTGPIQNVAEV
LEDPQIRARNMVVDVLDRDGNPAYVAAGNPIKMSALKDPSTRPAAPKLDENREEILTWLREA
>Mature_382_residues
MLAPLDGLIILDLTHVLAGPYASMTLSDLGARVIKVERPGVGDDTRAFPPFKDGESAYFATINHGKESIALDLKNAKDRI
VFEELLQKSDVVLENYRPGVMERLGYGWDDLHPKYPKLIYGAVSGFGHSGPDSQRPAYDMVVQARGGVMSITGERDREPV
RVGASIGDIAAGMFLAQGILAALLQREKTGEGQKIDIAMLDCQLAMLEHAIALTTISGEAPRPSGARHPSITPFETFHAA
DGLFVIAAGNDVLFARLCEALELPIAQDERFATNPARCENARLLKRLIEAVTLEHGKRHWIDLLTKAGVPTGPIQNVAEV
LEDPQIRARNMVVDVLDRDGNPAYVAAGNPIKMSALKDPSTRPAAPKLDENREEILTWLREA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=377, Percent_Identity=38.9920424403183, Blast_Score=278, Evalue=8e-75,
Organism=Homo sapiens, GI300863124, Length=326, Percent_Identity=42.0245398773006, Blast_Score=273, Evalue=3e-73,
Organism=Homo sapiens, GI13376042, Length=326, Percent_Identity=38.6503067484663, Blast_Score=233, Evalue=2e-61,
Organism=Homo sapiens, GI300863126, Length=377, Percent_Identity=33.9522546419098, Blast_Score=217, Evalue=1e-56,
Organism=Homo sapiens, GI266456254, Length=374, Percent_Identity=28.8770053475936, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI42794625, Length=374, Percent_Identity=28.8770053475936, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI266458393, Length=271, Percent_Identity=32.4723247232472, Blast_Score=129, Evalue=5e-30,
Organism=Homo sapiens, GI266458397, Length=243, Percent_Identity=33.7448559670782, Blast_Score=128, Evalue=9e-30,
Organism=Homo sapiens, GI266458395, Length=136, Percent_Identity=36.7647058823529, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI42822893, Length=143, Percent_Identity=36.3636363636364, Blast_Score=94, Evalue=2e-19,
Organism=Escherichia coli, GI87082093, Length=374, Percent_Identity=44.9197860962567, Blast_Score=355, Evalue=4e-99,
Organism=Escherichia coli, GI1788717, Length=403, Percent_Identity=32.258064516129, Blast_Score=174, Evalue=1e-44,
Organism=Escherichia coli, GI1786222, Length=351, Percent_Identity=24.5014245014245, Blast_Score=87, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=348, Percent_Identity=23.5632183908046, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=323, Percent_Identity=22.9102167182663, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24648431, Length=380, Percent_Identity=38.4210526315789, Blast_Score=258, Evalue=3e-69,
Organism=Drosophila melanogaster, GI24585488, Length=381, Percent_Identity=26.509186351706, Blast_Score=120, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41580; Mature: 41580

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAPLDGLIILDLTHVLAGPYASMTLSDLGARVIKVERPGVGDDTRAFPPFKDGESAYFA
CCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEE
TINHGKESIALDLKNAKDRIVFEELLQKSDVVLENYRPGVMERLGYGWDDLHPKYPKLIY
EEECCCCEEEEEECCCCHHHHHHHHHHHCCHHHHCCCCCHHHHHCCCHHHCCCCCHHHHH
GAVSGFGHSGPDSQRPAYDMVVQARGGVMSITGERDREPVRVGASIGDIAAGMFLAQGIL
HHHHCCCCCCCCCCCCHHHHHEECCCCEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHH
AALLQREKTGEGQKIDIAMLDCQLAMLEHAIALTTISGEAPRPSGARHPSITPFETFHAA
HHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCHHHHHCC
DGLFVIAAGNDVLFARLCEALELPIAQDERFATNPARCENARLLKRLIEAVTLEHGKRHW
CCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH
IDLLTKAGVPTGPIQNVAEVLEDPQIRARNMVVDVLDRDGNPAYVAAGNPIKMSALKDPS
HHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHEEEEECCCCCEEEEECCCCEEEEECCCCC
TRPAAPKLDENREEILTWLREA
CCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MLAPLDGLIILDLTHVLAGPYASMTLSDLGARVIKVERPGVGDDTRAFPPFKDGESAYFA
CCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEE
TINHGKESIALDLKNAKDRIVFEELLQKSDVVLENYRPGVMERLGYGWDDLHPKYPKLIY
EEECCCCEEEEEECCCCHHHHHHHHHHHCCHHHHCCCCCHHHHHCCCHHHCCCCCHHHHH
GAVSGFGHSGPDSQRPAYDMVVQARGGVMSITGERDREPVRVGASIGDIAAGMFLAQGIL
HHHHCCCCCCCCCCCCHHHHHEECCCCEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHH
AALLQREKTGEGQKIDIAMLDCQLAMLEHAIALTTISGEAPRPSGARHPSITPFETFHAA
HHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCHHHHHCC
DGLFVIAAGNDVLFARLCEALELPIAQDERFATNPARCENARLLKRLIEAVTLEHGKRHW
CCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH
IDLLTKAGVPTGPIQNVAEVLEDPQIRARNMVVDVLDRDGNPAYVAAGNPIKMSALKDPS
HHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHEEEEECCCCCEEEEECCCCEEEEECCCCC
TRPAAPKLDENREEILTWLREA
CCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]