Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080593

Identifier: 99080593

GI number: 99080593

Start: 808785

End: 809177

Strand: Direct

Name: 99080593

Synonym: TM1040_0752

Alternate gene names: NA

Gene position: 808785-809177 (Clockwise)

Preceding gene: 99080592

Following gene: 99080594

Centisome position: 25.27

GC content: 59.03

Gene sequence:

>393_bases
GTGATCCGCACGGCGCTCATATCGCTTTTGGGGCTCAACCTCATCGCCTGCACGGATGTCACGGGTGATGAGGTAAGCCG
TGCCGCGCCCGACTATCTGGGCGTGAATACCAGTCTCCTCGATGGGGATCTGGTCCAGTTCCATGTGACCATGGACCGGG
TTGGGGCGCTTGAGGATCTTAATGACTATGCCGACTGCGCAGCAGCACAATATGCGCTGATCCGCGGCTATGGCTTCGCG
CGTCATGTGCGCACAAAAACGAAACAAGAGGCTGGTATTTGGGAGGCCGATGCGGTCTACACCATCTCGCCCGCCTTACC
GCGCGGTTTGCGCACCCTCGACGCAGAAGTCGTGGTGCAGGACTGCAAGGCAAACGGAATACCTACGGTGTGA

Upstream 100 bases:

>100_bases
ACGACTTTTACCTGACCAACCCGATTGCACGCGCATCGCAGCTGATGGCGGAGCTCTCCGCTCAGGCCAAGGCGCGCCGC
GAAACGGCGCTGGCGGCAGA

Downstream 100 bases:

>100_bases
GGACCCATGGCTGAATTCTTTAACACCCCAGGCGGCATTGCTGTCATCATCCTGGCGCAGACCCTGGCGGTTGTCGCCTT
TGTGATGATCTCGCTTCTGT

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MIRTALISLLGLNLIACTDVTGDEVSRAAPDYLGVNTSLLDGDLVQFHVTMDRVGALEDLNDYADCAAAQYALIRGYGFA
RHVRTKTKQEAGIWEADAVYTISPALPRGLRTLDAEVVVQDCKANGIPTV

Sequences:

>Translated_130_residues
MIRTALISLLGLNLIACTDVTGDEVSRAAPDYLGVNTSLLDGDLVQFHVTMDRVGALEDLNDYADCAAAQYALIRGYGFA
RHVRTKTKQEAGIWEADAVYTISPALPRGLRTLDAEVVVQDCKANGIPTV
>Mature_130_residues
MIRTALISLLGLNLIACTDVTGDEVSRAAPDYLGVNTSLLDGDLVQFHVTMDRVGALEDLNDYADCAAAQYALIRGYGFA
RHVRTKTKQEAGIWEADAVYTISPALPRGLRTLDAEVVVQDCKANGIPTV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13996; Mature: 13996

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRTALISLLGLNLIACTDVTGDEVSRAAPDYLGVNTSLLDGDLVQFHVTMDRVGALEDL
CHHHHHHHHHHCCEEEECCCCCHHHHHCCCCCCCCCCEECCCCEEEEEEEHHHHCCHHHH
NDYADCAAAQYALIRGYGFARHVRTKTKQEAGIWEADAVYTISPALPRGLRTLDAEVVVQ
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
DCKANGIPTV
HHCCCCCCCC
>Mature Secondary Structure
MIRTALISLLGLNLIACTDVTGDEVSRAAPDYLGVNTSLLDGDLVQFHVTMDRVGALEDL
CHHHHHHHHHHCCEEEECCCCCHHHHHCCCCCCCCCCEECCCCEEEEEEEHHHHCCHHHH
NDYADCAAAQYALIRGYGFARHVRTKTKQEAGIWEADAVYTISPALPRGLRTLDAEVVVQ
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
DCKANGIPTV
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA