| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is nqo3 [H]
Identifier: 99080592
GI number: 99080592
Start: 806806
End: 808788
Strand: Direct
Name: nqo3 [H]
Synonym: TM1040_0751
Alternate gene names: 99080592
Gene position: 806806-808788 (Clockwise)
Preceding gene: 99080591
Following gene: 99080593
Centisome position: 25.21
GC content: 61.88
Gene sequence:
>1983_bases ATGTCTGACCTCCGCAAGATCAACATTGACGGAACCGAGATCGAAGTCGACGGGGCGATGACCCTGATCCAGGCTTGCGA GCAGGCCGGGATCGAGATCCCGCGTTTTTGCTATCACGAACGTCTGTCGATTGCCGGCAACTGCCGTATGTGCCTCGTCG AGGTGGTGGGCGGCCCGCCGAAACCGGCAGCGTCCTGTGCGATGCAGGTCCGCGATCTGCGCCCGGGACCAGAGGGGCAG GCCCCGCAGGTGAAGACCAATTCACCGATGGTCAAAAAGGCGCGTGAAGGGGTGATGGAGTTTCTCCTGATCAACCACCC GCTCGACTGCCCGATCTGCGATCAGGGCGGCGAATGCGACCTGCAAGATCAGGCGATGGCTTACGGCGTTGATTTCTCGC GCTTCCGCGAACCCAAACGCGCGGTGGACGATCTGAACCTCGGCCCGCTTGTGGGCACCGCGATGACCCGCTGCATTTCC TGCACCCGTTGCGTGCGCTTCACCACCGAGGTCGCAGGCATTTCGCAGATGGGTCAGACCGGGCGCGGCGAGGATGCGGA GATCACCTCCTACCTCAATGAGACGCTGGATTCGAACCTGCAGGGCAACATCATCGATCTTTGTCCCGTGGGCGCGCTGA CCTCGAAACCTTATGCGTTTACCGCGCGTCCGTGGGAACTCACCAAGACCGAGACCATCGACGTGATGGACGCGCTCGGA TCAAACATCCGCGTGGACACTAAGGGCCGCGAAGTGATGCGTATTCTGCCGCGCAACCATGATGGCGTGAACGAAGAGTG GATCTCTGACAAGACCCGTTTTGTCTGGGATGGTCTGCGCCGTCAGCGGCTTGACCGCCCCTATGTGCGCGTCGATGGCA AGCTGAAGCCTGCCACTTGGCCCGAGGCGCTGGAGGCTGTCGCCACCGCGATGAAAGGCAAAAAAGTTGCCGGTTTGATT GGCGATCTGGTTCCGGTCGAGGCAGCTTATGCGCTCAAAGGCCTGATCGAGAGCCTCGAGGGCAAGGTGGACTGCCGCAC GGATAATGCGCGCCTGCCCATTGGCAACCGCGCAGGCTATGTGGGCACCGCTACGATCGAGGACATCGATACTGCCAGGG ACATCATCCTGATTGGCACCAACCCTCGCGACGAGGCGCCGGTGCTGAACGCGCGCATCCGCAAGGCGTGGCTCAAGGGG GCCAATGTCAAACTCGTCGGTCCTGCCGCTGATTTGACCTATGACTATGAACATCTCGGCACTGATCGCGCGGCGCTTGA TGCGCTCTCTGCGATTGAGGACGCGATTGTCATCGTGGGGCAGGGTGCCCTGCGCGAAGCCGACGGTCTGGCGGTTCTCG CCAAGGCGCAGTCTCTGGGTAAGCTGCTGGTCCTGCACACCGCCGCCGCTCGTGTGGGCGCGATGGACATTGGGGCCGTC ACCGAGGGTGGCATGGCAGCAGCCATCGACGGAGCAGAGGTGATTTATAACCTCGGTGCCGACGAGGTGGAAATCGACGC GGGTGCTTTCGTGATCTATCAAGGTTCGCACGGCGACCGCGGCGCGCATCGCGCTGACGTGATCCTGCCGGGGGCAGCCT ACACCGAAGAAAACGGTCTCTTTGTGAACACCGAAGGCCGTACACAGCTCTCGATGCGGGCTGGATTTGCACCGGGGGAG GCGAAAGAAAACTGGGCCATCCTGCGGGCGCTTTCCGCAGAGCTCGATGCCAAACTGCCCTATGACAGCCTCGCGCAACT GCGAAAGGCGCTGATCAAGGACGTGCCGCATCTGGCCAAGGTGGATCAGGTGGTCGCCAATGAAGGCGAGGCTCTGCCAG CTGAAAAACTCGGTAAGGCGGATTTCCTTCCTGCGGTGAACGACTTTTACCTGACCAACCCGATTGCACGCGCATCGCAG CTGATGGCGGAGCTCTCCGCTCAGGCCAAGGCGCGCCGCGAAACGGCGCTGGCGGCAGAGTGA
Upstream 100 bases:
>100_bases CGGGGTGAAACTGGACCAACCGGAAACATTCTGTGCTTACGGGCTTGCAGAAATTGAGAAAAACAGCGCGATCGGCGTGT TACTGAGGGCGAAATAGACC
Downstream 100 bases:
>100_bases TCCGCACGGCGCTCATATCGCTTTTGGGGCTCAACCTCATCGCCTGCACGGATGTCACGGGTGATGAGGTAAGCCGTGCC GCGCCCGACTATCTGGGCGT
Product: NADH dehydrogenase subunit G
Products: NA
Alternate protein names: NADH dehydrogenase I, chain 3; NDH-1, chain 3 [H]
Number of amino acids: Translated: 660; Mature: 659
Protein sequence:
>660_residues MSDLRKINIDGTEIEVDGAMTLIQACEQAGIEIPRFCYHERLSIAGNCRMCLVEVVGGPPKPAASCAMQVRDLRPGPEGQ APQVKTNSPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDFSRFREPKRAVDDLNLGPLVGTAMTRCIS CTRCVRFTTEVAGISQMGQTGRGEDAEITSYLNETLDSNLQGNIIDLCPVGALTSKPYAFTARPWELTKTETIDVMDALG SNIRVDTKGREVMRILPRNHDGVNEEWISDKTRFVWDGLRRQRLDRPYVRVDGKLKPATWPEALEAVATAMKGKKVAGLI GDLVPVEAAYALKGLIESLEGKVDCRTDNARLPIGNRAGYVGTATIEDIDTARDIILIGTNPRDEAPVLNARIRKAWLKG ANVKLVGPAADLTYDYEHLGTDRAALDALSAIEDAIVIVGQGALREADGLAVLAKAQSLGKLLVLHTAAARVGAMDIGAV TEGGMAAAIDGAEVIYNLGADEVEIDAGAFVIYQGSHGDRGAHRADVILPGAAYTEENGLFVNTEGRTQLSMRAGFAPGE AKENWAILRALSAELDAKLPYDSLAQLRKALIKDVPHLAKVDQVVANEGEALPAEKLGKADFLPAVNDFYLTNPIARASQ LMAELSAQAKARRETALAAE
Sequences:
>Translated_660_residues MSDLRKINIDGTEIEVDGAMTLIQACEQAGIEIPRFCYHERLSIAGNCRMCLVEVVGGPPKPAASCAMQVRDLRPGPEGQ APQVKTNSPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDFSRFREPKRAVDDLNLGPLVGTAMTRCIS CTRCVRFTTEVAGISQMGQTGRGEDAEITSYLNETLDSNLQGNIIDLCPVGALTSKPYAFTARPWELTKTETIDVMDALG SNIRVDTKGREVMRILPRNHDGVNEEWISDKTRFVWDGLRRQRLDRPYVRVDGKLKPATWPEALEAVATAMKGKKVAGLI GDLVPVEAAYALKGLIESLEGKVDCRTDNARLPIGNRAGYVGTATIEDIDTARDIILIGTNPRDEAPVLNARIRKAWLKG ANVKLVGPAADLTYDYEHLGTDRAALDALSAIEDAIVIVGQGALREADGLAVLAKAQSLGKLLVLHTAAARVGAMDIGAV TEGGMAAAIDGAEVIYNLGADEVEIDAGAFVIYQGSHGDRGAHRADVILPGAAYTEENGLFVNTEGRTQLSMRAGFAPGE AKENWAILRALSAELDAKLPYDSLAQLRKALIKDVPHLAKVDQVVANEGEALPAEKLGKADFLPAVNDFYLTNPIARASQ LMAELSAQAKARRETALAAE >Mature_659_residues SDLRKINIDGTEIEVDGAMTLIQACEQAGIEIPRFCYHERLSIAGNCRMCLVEVVGGPPKPAASCAMQVRDLRPGPEGQA PQVKTNSPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDFSRFREPKRAVDDLNLGPLVGTAMTRCISC TRCVRFTTEVAGISQMGQTGRGEDAEITSYLNETLDSNLQGNIIDLCPVGALTSKPYAFTARPWELTKTETIDVMDALGS NIRVDTKGREVMRILPRNHDGVNEEWISDKTRFVWDGLRRQRLDRPYVRVDGKLKPATWPEALEAVATAMKGKKVAGLIG DLVPVEAAYALKGLIESLEGKVDCRTDNARLPIGNRAGYVGTATIEDIDTARDIILIGTNPRDEAPVLNARIRKAWLKGA NVKLVGPAADLTYDYEHLGTDRAALDALSAIEDAIVIVGQGALREADGLAVLAKAQSLGKLLVLHTAAARVGAMDIGAVT EGGMAAAIDGAEVIYNLGADEVEIDAGAFVIYQGSHGDRGAHRADVILPGAAYTEENGLFVNTEGRTQLSMRAGFAPGEA KENWAILRALSAELDAKLPYDSLAQLRKALIKDVPHLAKVDQVVANEGEALPAEKLGKADFLPAVNDFYLTNPIARASQL MAELSAQAKARRETALAAE
Specific function: NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocat
COG id: COG1034
COG function: function code C; NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G)
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]
Homologues:
Organism=Homo sapiens, GI33519475, Length=707, Percent_Identity=47.9490806223479, Blast_Score=611, Evalue=1e-175, Organism=Escherichia coli, GI145693161, Length=333, Percent_Identity=31.5315315315315, Blast_Score=190, Evalue=3e-49, Organism=Caenorhabditis elegans, GI17565758, Length=704, Percent_Identity=46.875, Blast_Score=570, Evalue=1e-163, Organism=Caenorhabditis elegans, GI32566231, Length=585, Percent_Identity=50.0854700854701, Blast_Score=526, Evalue=1e-149, Organism=Caenorhabditis elegans, GI193209088, Length=259, Percent_Identity=60.2316602316602, Blast_Score=323, Evalue=1e-88, Organism=Drosophila melanogaster, GI24640559, Length=693, Percent_Identity=46.7532467532467, Blast_Score=575, Evalue=1e-164, Organism=Drosophila melanogaster, GI24640557, Length=693, Percent_Identity=46.7532467532467, Blast_Score=575, Evalue=1e-164,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012675 - InterPro: IPR001041 - InterPro: IPR006656 - InterPro: IPR000283 - InterPro: IPR010228 - InterPro: IPR019574 - InterPro: IPR015405 [H]
Pfam domain/function: PF09326 DUF1982; PF00111 Fer2; PF00384 Molybdopterin; PF10588 NADH-G_4Fe-4S_3 [H]
EC number: =1.6.99.5 [H]
Molecular weight: Translated: 71033; Mature: 70902
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: PS00641 COMPLEX1_75K_1 ; PS00642 COMPLEX1_75K_2 ; PS00643 COMPLEX1_75K_3 ; PS51085 2FE2S_FER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDLRKINIDGTEIEVDGAMTLIQACEQAGIEIPRFCYHERLSIAGNCRMCLVEVVGGPP CCCCEEECCCCCEEEECHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCC KPAASCAMQVRDLRPGPEGQAPQVKTNSPMVKKAREGVMEFLLINHPLDCPICDQGGECD CHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC LQDQAMAYGVDFSRFREPKRAVDDLNLGPLVGTAMTRCISCTRCVRFTTEVAGISQMGQT CCCCHHHCCCCHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GRGEDAEITSYLNETLDSNLQGNIIDLCPVGALTSKPYAFTARPWELTKTETIDVMDALG CCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCHHHHHHHHCC SNIRVDTKGREVMRILPRNHDGVNEEWISDKTRFVWDGLRRQRLDRPYVRVDGKLKPATW CCEEEECCCHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCEEEECCEECCCCC PEALEAVATAMKGKKVAGLIGDLVPVEAAYALKGLIESLEGKVDCRTDNARLPIGNRAGY HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCE VGTATIEDIDTARDIILIGTNPRDEAPVLNARIRKAWLKGANVKLVGPAADLTYDYEHLG EEECCHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCEECHHHHC TDRAALDALSAIEDAIVIVGQGALREADGLAVLAKAQSLGKLLVLHTAAARVGAMDIGAV CCHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEHHHHCCEEEEEHHHHHHCCCEECCC TEGGMAAAIDGAEVIYNLGADEVEIDAGAFVIYQGSHGDRGAHRADVILPGAAYTEENGL CCCCEEEEECHHHHHEECCCCCEEECCCEEEEEECCCCCCCCCCCCEEECCCCEECCCCE FVNTEGRTQLSMRAGFAPGEAKENWAILRALSAELDAKLPYDSLAQLRKALIKDVPHLAK EEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHH VDQVVANEGEALPAEKLGKADFLPAVNDFYLTNPIARASQLMAELSAQAKARRETALAAE HHHHHHCCCCCCCHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SDLRKINIDGTEIEVDGAMTLIQACEQAGIEIPRFCYHERLSIAGNCRMCLVEVVGGPP CCCEEECCCCCEEEECHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCC KPAASCAMQVRDLRPGPEGQAPQVKTNSPMVKKAREGVMEFLLINHPLDCPICDQGGECD CHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC LQDQAMAYGVDFSRFREPKRAVDDLNLGPLVGTAMTRCISCTRCVRFTTEVAGISQMGQT CCCCHHHCCCCHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GRGEDAEITSYLNETLDSNLQGNIIDLCPVGALTSKPYAFTARPWELTKTETIDVMDALG CCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCHHHHHHHHCC SNIRVDTKGREVMRILPRNHDGVNEEWISDKTRFVWDGLRRQRLDRPYVRVDGKLKPATW CCEEEECCCHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCEEEECCEECCCCC PEALEAVATAMKGKKVAGLIGDLVPVEAAYALKGLIESLEGKVDCRTDNARLPIGNRAGY HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCE VGTATIEDIDTARDIILIGTNPRDEAPVLNARIRKAWLKGANVKLVGPAADLTYDYEHLG EEECCHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCEECHHHHC TDRAALDALSAIEDAIVIVGQGALREADGLAVLAKAQSLGKLLVLHTAAARVGAMDIGAV CCHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEHHHHCCEEEEEHHHHHHCCCEECCC TEGGMAAAIDGAEVIYNLGADEVEIDAGAFVIYQGSHGDRGAHRADVILPGAAYTEENGL CCCCEEEEECHHHHHEECCCCCEEECCCEEEEEECCCCCCCCCCCCEEECCCCEECCCCE FVNTEGRTQLSMRAGFAPGEAKENWAILRALSAELDAKLPYDSLAQLRKALIKDVPHLAK EEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHH VDQVVANEGEALPAEKLGKADFLPAVNDFYLTNPIARASQLMAELSAQAKARRETALAAE HHHHHHCCCCCCCHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1605643; 8422400 [H]