| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is sam [H]
Identifier: 99080505
GI number: 99080505
Start: 709699
End: 710691
Strand: Reverse
Name: sam [H]
Synonym: TM1040_0664
Alternate gene names: 99080505
Gene position: 710691-709699 (Counterclockwise)
Preceding gene: 99080508
Following gene: 99080503
Centisome position: 22.2
GC content: 61.13
Gene sequence:
>993_bases ATGGGCACGTTGCGACCGCGGCTTTTGCGCTTGCCTTTGGGCGAGCCAGAGCGCACCGATGACGCCATGACCCATGAGAC CCCACAGAACCCACCCCTTGCCGCGGCGCTGATCCTGCTGGCCACCGTGTTCATCGCCGGCACCACGTTGCTGGCAAAAT CACTTGGCACAGAGGTGCTTGCCCCCCCTTTGCACGCCTTGCAGATCAGTCAGGGACGGTTTGTTTTTGCCTTTATCGGG ATCTCCGCCGCCGTGGTGGTTCTGCGCCAGAAGATCCACACGCCGCATTGGGGACTGCATATCGGGCGGTCGTCTTTTGG ATGGGGCGGCGTCACGCTGATGTTTGCCTCTGTGGCCTTTATTCCTCTGGCGGATGCGACAGCGATCTCTTTTCTCAACC CTGTGATCGGCATGATCCTCGCAATCCCTTTCCTGGGTGAAAAGGTCGGGCCCTGGCGTTGGCTGGCGGCAGCGATCGCG CTTCTGGGGGCTATGGTTCTTTTGCGACCGACACCTGCGAGTTTCCAGCCAGCGGCGCTGCTTGCATTTGGGGCGGCGCT TGCGATGGGCGCAGAACTGATTTTTATCAAGACCCTCGCAAGGCGCGAGCCACCATTGCAGATCCTGTGGGTGAATAACT TGATCGGTATGGTCATTGCCTCAACGGCAGCATTGGCCGTTTGGCAGATGCCAACGCCCGCTCAATGGGCGGCCCTTGTG GCGCTTGGGGCGTTGATGGCCTGCGCGCAGGCGTGTTTTGTCAATGCGATGGCGCGGGCGGACGCCTCGTTTGTGGCTCC CTTCGCCTATGCCACATTGGTGTTTGCCGCACTCTATGATGCGCTGATCTTTGGAGTTTTGCCTGACTGGGTCACGGTCT TGGGGGCTGGCATCATCCTCTCTGGAGCGGGGTTGCTTGCCTGGCGCGAGAGCGTCAACGGCAAGCGTCCCCTGGTGACA GAGCCCCTGCCCCGCAGCGACACCGTGCTCTAG
Upstream 100 bases:
>100_bases TGATCATAGTTCGGCTCCATAACGGAAGGCAGCGCGACTGAAAACCCCCTTTGGCACCCAAGTTGCAACAAAACGGCAGA AGCGCACCGATTCATAGCCA
Downstream 100 bases:
>100_bases TTCTTCAGCCGGTAGCCTGTCCGAAGCATCTGCCAGGCCAGCAGCAATATGACAGCCGTCGCCCCAAGGCACACTAGCGC GCCAAAGGCCGGGTCGCTGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 330; Mature: 329
Protein sequence:
>330_residues MGTLRPRLLRLPLGEPERTDDAMTHETPQNPPLAAALILLATVFIAGTTLLAKSLGTEVLAPPLHALQISQGRFVFAFIG ISAAVVVLRQKIHTPHWGLHIGRSSFGWGGVTLMFASVAFIPLADATAISFLNPVIGMILAIPFLGEKVGPWRWLAAAIA LLGAMVLLRPTPASFQPAALLAFGAALAMGAELIFIKTLARREPPLQILWVNNLIGMVIASTAALAVWQMPTPAQWAALV ALGALMACAQACFVNAMARADASFVAPFAYATLVFAALYDALIFGVLPDWVTVLGAGIILSGAGLLAWRESVNGKRPLVT EPLPRSDTVL
Sequences:
>Translated_330_residues MGTLRPRLLRLPLGEPERTDDAMTHETPQNPPLAAALILLATVFIAGTTLLAKSLGTEVLAPPLHALQISQGRFVFAFIG ISAAVVVLRQKIHTPHWGLHIGRSSFGWGGVTLMFASVAFIPLADATAISFLNPVIGMILAIPFLGEKVGPWRWLAAAIA LLGAMVLLRPTPASFQPAALLAFGAALAMGAELIFIKTLARREPPLQILWVNNLIGMVIASTAALAVWQMPTPAQWAALV ALGALMACAQACFVNAMARADASFVAPFAYATLVFAALYDALIFGVLPDWVTVLGAGIILSGAGLLAWRESVNGKRPLVT EPLPRSDTVL >Mature_329_residues GTLRPRLLRLPLGEPERTDDAMTHETPQNPPLAAALILLATVFIAGTTLLAKSLGTEVLAPPLHALQISQGRFVFAFIGI SAAVVVLRQKIHTPHWGLHIGRSSFGWGGVTLMFASVAFIPLADATAISFLNPVIGMILAIPFLGEKVGPWRWLAAAIAL LGAMVLLRPTPASFQPAALLAFGAALAMGAELIFIKTLARREPPLQILWVNNLIGMVIASTAALAVWQMPTPAQWAALVA LGALMACAQACFVNAMARADASFVAPFAYATLVFAALYDALIFGVLPDWVTVLGAGIILSGAGLLAWRESVNGKRPLVTE PLPRSDTVL
Specific function: Transports S-adenosylmethionine [H]
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 34888; Mature: 34757
Theoretical pI: Translated: 9.80; Mature: 9.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTLRPRLLRLPLGEPERTDDAMTHETPQNPPLAAALILLATVFIAGTTLLAKSLGTEVL CCCCCCHHEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH APPLHALQISQGRFVFAFIGISAAVVVLRQKIHTPHWGLHIGRSSFGWGGVTLMFASVAF CCCHHHEEECCCCEEEEHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHH IPLADATAISFLNPVIGMILAIPFLGEKVGPWRWLAAAIALLGAMVLLRPTPASFQPAAL HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH LAFGAALAMGAELIFIKTLARREPPLQILWVNNLIGMVIASTAALAVWQMPTPAQWAALV HHHHHHHHHCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH ALGALMACAQACFVNAMARADASFVAPFAYATLVFAALYDALIFGVLPDWVTVLGAGIIL HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SGAGLLAWRESVNGKRPLVTEPLPRSDTVL CCCHHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure GTLRPRLLRLPLGEPERTDDAMTHETPQNPPLAAALILLATVFIAGTTLLAKSLGTEVL CCCCCHHEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH APPLHALQISQGRFVFAFIGISAAVVVLRQKIHTPHWGLHIGRSSFGWGGVTLMFASVAF CCCHHHEEECCCCEEEEHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHH IPLADATAISFLNPVIGMILAIPFLGEKVGPWRWLAAAIALLGAMVLLRPTPASFQPAAL HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH LAFGAALAMGAELIFIKTLARREPPLQILWVNNLIGMVIASTAALAVWQMPTPAQWAALV HHHHHHHHHCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH ALGALMACAQACFVNAMARADASFVAPFAYATLVFAALYDALIFGVLPDWVTVLGAGIIL HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SGAGLLAWRESVNGKRPLVTEPLPRSDTVL CCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA