| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080320
Identifier: 99080320
GI number: 99080320
Start: 501173
End: 501775
Strand: Reverse
Name: 99080320
Synonym: TM1040_0479
Alternate gene names: NA
Gene position: 501775-501173 (Counterclockwise)
Preceding gene: 99080322
Following gene: 99080318
Centisome position: 15.68
GC content: 64.68
Gene sequence:
>603_bases ATGGGCATCGAGGCCGTGCAGACATTCACTGAACAAAATGAACGCCCGCGCAGCCGCTCTGTGCGAGTCGCCCTGCGCGG GGCGCTTTGTGCACTTGTGATGGGTGGTTTCTTTGTCAGCACGGCCCCCGTCGCCACCGCGCAGGAGAGCGCGCCCGAGA GAGCTGCCGCGCAAACTCTTGGGCCGGTCACGAACCTGCCCCTGCCCCGCTACGTGTCCATGAAAGCCGCCGAAGGCAAC GTGCGCCGTGGCCCGTCACTCAATCATCGTATCGACTGGGTGTTCAAACGCCGCGGGATGCCATTGGAGGTCACGGCCGA ATATGGCCACTGGCGACGCGTGCGTGACCGGGATGGACAAGGAGGCTGGGTTCATTACGCGCTTTTGTCGGGGGTGCGCA CGGTCTTGGTCGAACAGGATCTTGTGCAAGTGCGCGCACGCCCTCAGGAGGACGCGCCGGCGGTGGCCGCGTTTGAGCTT GGGGTTGTGGCCCAGCTTGGCGCCTGCACGCGCGACTGGTGCGAAATCACCGCCGGGGGACACAGCGGCTGGACGCACAA AGACAATCTCTGGGGCGTTGATCCGGACGAACTGCGCGAGTAA
Upstream 100 bases:
>100_bases GCGGGTACAAGCACCCTTCCGCCCGCGCTTGCATTGCGCTAAGAGCCGATGCAGGATCAGCGGGTGACGAGATCATAAAA ACAAGGCGCCCGAGACAACA
Downstream 100 bases:
>100_bases CCCGTGCAGCAAACCTAGCGCTCCGCAACCACCCGCAGGATCCTCCCGCCTGGCCCACCCGGACCACGACGACTGGCGCT TGGTGCAAGGTATCGGCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: Signal Peptide
Number of amino acids: Translated: 200; Mature: 199
Protein sequence:
>200_residues MGIEAVQTFTEQNERPRSRSVRVALRGALCALVMGGFFVSTAPVATAQESAPERAAAQTLGPVTNLPLPRYVSMKAAEGN VRRGPSLNHRIDWVFKRRGMPLEVTAEYGHWRRVRDRDGQGGWVHYALLSGVRTVLVEQDLVQVRARPQEDAPAVAAFEL GVVAQLGACTRDWCEITAGGHSGWTHKDNLWGVDPDELRE
Sequences:
>Translated_200_residues MGIEAVQTFTEQNERPRSRSVRVALRGALCALVMGGFFVSTAPVATAQESAPERAAAQTLGPVTNLPLPRYVSMKAAEGN VRRGPSLNHRIDWVFKRRGMPLEVTAEYGHWRRVRDRDGQGGWVHYALLSGVRTVLVEQDLVQVRARPQEDAPAVAAFEL GVVAQLGACTRDWCEITAGGHSGWTHKDNLWGVDPDELRE >Mature_199_residues GIEAVQTFTEQNERPRSRSVRVALRGALCALVMGGFFVSTAPVATAQESAPERAAAQTLGPVTNLPLPRYVSMKAAEGNV RRGPSLNHRIDWVFKRRGMPLEVTAEYGHWRRVRDRDGQGGWVHYALLSGVRTVLVEQDLVQVRARPQEDAPAVAAFELG VVAQLGACTRDWCEITAGGHSGWTHKDNLWGVDPDELRE
Specific function: Unknown
COG id: COG3807
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22039; Mature: 21908
Theoretical pI: Translated: 8.10; Mature: 8.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIEAVQTFTEQNERPRSRSVRVALRGALCALVMGGFFVSTAPVATAQESAPERAAAQTL CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHH GPVTNLPLPRYVSMKAAEGNVRRGPSLNHRIDWVFKRRGMPLEVTAEYGHWRRVRDRDGQ CCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCHHHHCCCCCC GGWVHYALLSGVRTVLVEQDLVQVRARPQEDAPAVAAFELGVVAQLGACTRDWCEITAGG CCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHEECCC HSGWTHKDNLWGVDPDELRE CCCCCCCCCCCCCCHHHHCC >Mature Secondary Structure GIEAVQTFTEQNERPRSRSVRVALRGALCALVMGGFFVSTAPVATAQESAPERAAAQTL CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHH GPVTNLPLPRYVSMKAAEGNVRRGPSLNHRIDWVFKRRGMPLEVTAEYGHWRRVRDRDGQ CCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCHHHHCCCCCC GGWVHYALLSGVRTVLVEQDLVQVRARPQEDAPAVAAFELGVVAQLGACTRDWCEITAGG CCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHEECCC HSGWTHKDNLWGVDPDELRE CCCCCCCCCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA