Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is paaX [C]

Identifier: 99080277

GI number: 99080277

Start: 452191

End: 453096

Strand: Reverse

Name: paaX [C]

Synonym: TM1040_0436

Alternate gene names: 99080277

Gene position: 453096-452191 (Counterclockwise)

Preceding gene: 99080278

Following gene: 99080275

Centisome position: 14.16

GC content: 62.8

Gene sequence:

>906_bases
ATGGCAGTTGGGCTGGCGCTAACCCGCGCCAGCCCTTATCGTATCTGCATGACACAACACACCGACGACTGGTTTACCAC
TGCAATCACGGCGCTCACTGAACCGGATGGCCTGAGGGTCTGGTCCATCATCGTGTCCTTCCTCGGAGATATGGCGCAAG
ACAAAGGCGCCGGCGTCAGCAGTGCTGCCTTGACGCGGGTTATTACTCCGCTTGGCATCAAACCAGAGGCCATTCGGGTT
GCGCTGCACCGTTTGCGTAAGGATGGCTGGACCGAGAGCCAGCGACGCGGGCGGGGCTCCTTTCATTTCCTGACTCCCTT
TGGGCGGCAGCAATCCGCGTTGGTGACCCCCCGTATCTACGCGCGCAGCACATGTGAAACAGACGCCTGGACCTTGCTTG
TTGCGGGCACGCCAGACGGGCTGGAGACGCTGGATGCGCTCTGCGACCAGACGCCACTAACCAGCATCCGGGTCAATCGC
CACGCCGCGATCACACCGGGCCCTGCCATGCAGCACGCCGCAGAGACCTCGCACATGCTGGTTGCAAATCTCGATGTGGC
GCATGTGCCCGGCTGGCTACAGGACGATCTCTTTCCAGAACCATTGCGGCAGAGCTGCGCGGCTCTTGACCAGGCCCTTG
CGCCCCTCGGGAGCCCACCAGACCTCTCTCCCTTGCAACGCGCCTGCCTGCGCACGCTCCTCGTCCATCGCTGGCGCCGG
ATTACGCTCCGACACCCGGACGTGCCACGCATATTTCACCCCGCAGATTGGAGCGGAGAATCCTGTCGCACGCGGGTCTT
TGCCCTGCTCGACAAGTTGCCGCAGCCCGAACTGGCAGAAATCGAAGACGCTGCCCCTGTGGCCGTACAAGCTGCGCCCC
AAGGCACAATCGCCGTAACTGGCTGA

Upstream 100 bases:

>100_bases
ATGTGACCCTCACCAATCAAGATGATGAGCTGGTGGCGGAATACGACCTGCTGACCATGGTGGCGTTCTGAACCCACCTC
AGCCTCGATGATGTCACGTC

Downstream 100 bases:

>100_bases
CATCAAACAAGAAGCCGGACGGCGGGCAAAAAAAATCTCCAAAATGTCGGATCTTTCTGTTTTCTCCCTTGACCCTGTCG
ATCGCATTCCGTAAATGGCC

Product: PaaX-like

Products: NA

Alternate protein names: PaaX Family Transcriptional Regulator; PaaX-Like; PaaX Domain-Containing Protein

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MAVGLALTRASPYRICMTQHTDDWFTTAITALTEPDGLRVWSIIVSFLGDMAQDKGAGVSSAALTRVITPLGIKPEAIRV
ALHRLRKDGWTESQRRGRGSFHFLTPFGRQQSALVTPRIYARSTCETDAWTLLVAGTPDGLETLDALCDQTPLTSIRVNR
HAAITPGPAMQHAAETSHMLVANLDVAHVPGWLQDDLFPEPLRQSCAALDQALAPLGSPPDLSPLQRACLRTLLVHRWRR
ITLRHPDVPRIFHPADWSGESCRTRVFALLDKLPQPELAEIEDAAPVAVQAAPQGTIAVTG

Sequences:

>Translated_301_residues
MAVGLALTRASPYRICMTQHTDDWFTTAITALTEPDGLRVWSIIVSFLGDMAQDKGAGVSSAALTRVITPLGIKPEAIRV
ALHRLRKDGWTESQRRGRGSFHFLTPFGRQQSALVTPRIYARSTCETDAWTLLVAGTPDGLETLDALCDQTPLTSIRVNR
HAAITPGPAMQHAAETSHMLVANLDVAHVPGWLQDDLFPEPLRQSCAALDQALAPLGSPPDLSPLQRACLRTLLVHRWRR
ITLRHPDVPRIFHPADWSGESCRTRVFALLDKLPQPELAEIEDAAPVAVQAAPQGTIAVTG
>Mature_300_residues
AVGLALTRASPYRICMTQHTDDWFTTAITALTEPDGLRVWSIIVSFLGDMAQDKGAGVSSAALTRVITPLGIKPEAIRVA
LHRLRKDGWTESQRRGRGSFHFLTPFGRQQSALVTPRIYARSTCETDAWTLLVAGTPDGLETLDALCDQTPLTSIRVNRH
AAITPGPAMQHAAETSHMLVANLDVAHVPGWLQDDLFPEPLRQSCAALDQALAPLGSPPDLSPLQRACLRTLLVHRWRRI
TLRHPDVPRIFHPADWSGESCRTRVFALLDKLPQPELAEIEDAAPVAVQAAPQGTIAVTG

Specific function: Negative Regulator Of The Paaz And Paaabcdefghijk Catabolic Operons. Binds The Consensus Sequence 5'- Wwtrtgattcgygwt-3'. Binding Of Paax Is Specifically Inhibited By Phenylacetyl-Coenzyme A. [C]

COG id: COG3327

COG function: function code K; Phenylacetic acid-responsive transcriptional repressor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32857; Mature: 32726

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVGLALTRASPYRICMTQHTDDWFTTAITALTEPDGLRVWSIIVSFLGDMAQDKGAGVS
CCCEEEEECCCCEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCH
SAALTRVITPLGIKPEAIRVALHRLRKDGWTESQRRGRGSFHFLTPFGRQQSALVTPRIY
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCEEEECCCCCCCCCEECCHHH
ARSTCETDAWTLLVAGTPDGLETLDALCDQTPLTSIRVNRHAAITPGPAMQHAAETSHML
HCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCEEEECCCEECCCCHHHHHHHHCCCEE
VANLDVAHVPGWLQDDLFPEPLRQSCAALDQALAPLGSPPDLSPLQRACLRTLLVHRWRR
EEECCHHHCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHE
ITLRHPDVPRIFHPADWSGESCRTRVFALLDKLPQPELAEIEDAAPVAVQAAPQGTIAVT
EEECCCCCCCEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEECCCCCEEEC
G
C
>Mature Secondary Structure 
AVGLALTRASPYRICMTQHTDDWFTTAITALTEPDGLRVWSIIVSFLGDMAQDKGAGVS
CCEEEEECCCCEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCH
SAALTRVITPLGIKPEAIRVALHRLRKDGWTESQRRGRGSFHFLTPFGRQQSALVTPRIY
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCEEEECCCCCCCCCEECCHHH
ARSTCETDAWTLLVAGTPDGLETLDALCDQTPLTSIRVNRHAAITPGPAMQHAAETSHML
HCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCEEEECCCEECCCCHHHHHHHHCCCEE
VANLDVAHVPGWLQDDLFPEPLRQSCAALDQALAPLGSPPDLSPLQRACLRTLLVHRWRR
EEECCHHHCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHE
ITLRHPDVPRIFHPADWSGESCRTRVFALLDKLPQPELAEIEDAAPVAVQAAPQGTIAVT
EEECCCCCCCEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEECCCCCEEEC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA