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The map label for this gene is yddU [C]

Identifier: 99080149

GI number: 99080149

Start: 314351

End: 315850

Strand: Reverse

Name: yddU [C]

Synonym: TM1040_0308

Alternate gene names: 99080149

Gene position: 315850-314351 (Counterclockwise)

Preceding gene: 99080150

Following gene: 99080148

Centisome position: 9.87

GC content: 63.07

Gene sequence:

>1500_bases
ATGTCGCGAGTTGTCTTCGGGCCGCCGATGCTGGCCTTCCTGCCTGCCATCAGCCTCAGCGCCTTCTGGTTTGGCGGCGA
ATCCGCGCTGCTGGCCGTGGCCCTTGGATTGCCGCTGACCTACGCCGTGCTTGGGGGTTTTTCCAAATCGCGCGAAACTA
CACCGGGGCGGGACGAGCTGACCGGATTCCTGCTGGCGCCGGGGTTTGAAACCCATGTGCGCGATGTGTTTGACCGCACC
GAGGGTACGGGCCTCAAATCCGCACTGGTGGTGGTCGAAATCGACGAATTCGATGCGCTTGTGGCCGCCCATGGCCAGGA
CGCCGGTGACATCGTGATGCAGCGCGTGGGCGAGCGCATGCGCTCGATCCTGCGTCATCGCGACACCATTGCGCGACTGG
GGCGCAACCGCTTTGCGATCTGCCTCACCCCGATCATGCAGCTTGATCTGGAGCTCTGCATCCAGCTCGCCGGACGCTTG
CAGTTCCGGATTGAAGAGCCGATCAAATTCGGGGGCACATCGCTCTTTGTGTCCTGCTCGATCGGAATCTGTCAGCGCCA
CCGCGTCCCCAAGGACGCCGGCAGCAGCTGGCTCGATTGCGCGGTCGCCGCCCTTGACGAGGCGCTGGTGGTCGGCCCCT
CCAGCATCCGCGCATATTCCAGTGACACGCATGTTCATCTGGACCGCACCGTCAACCTGATGGAGGACGCGGCCTCCGCG
CTCCAGAACGGTATGATCCAGGCCTGGTTCCAGCCACAGATCTGCACCGACACCGGGCGCGTATCGGGGTTTGAGGCGCT
GGCACGCTGGTGCCACCCGGTCAAAGGCATGATCCCCCCGTCGGCTTTTCTGCCCGCTCTCGAACATGCCGGTCTGCTGC
AAAAACTCAGCCAGGTCATGGTTGAACAAGCGCTGACCGCGCTGAAATCCTGGGATGCCGCTGGGCTCAAGGTGCCAACG
GTTGGAGTGAACTTCGCCACGGACGAGCTGCGCGATCCCGGCTTGGTCAACCGCATTCGCTGGGAACTGGACCGCTTTGG
CCTGACCCCGGACCGGCTCACCATCGAGGTGCTGGAAACGGTAATGACCGATCAGCCGGACGAGGTGGTGGCACGCAACA
TCACCGCCCTGGGCGAGATGGGCTGCCACATTGATCTCGACGATTTTGGCACCGGTCATGCCTCCATTGCCTCCGTGCGC
CGTTTCCGCGTGTCCCGGATCAAGATCGACCGGTCTTTTGTCACCAAAGCGGATCACGATCCCGAGCAGCAGAAGATGAT
CACCGCGATTCTGACCATGGCAGAACGGCTTGACCTCAAGACCCTCGCCGAAGGGGTGGAGACCGCAGGCGAACACGCTC
TCTTGGCGCAGCTGGGCTGTGATCATGTGCAGGGGTTCGGGATCGGTCGCCCGATGCCCTTTGACCAGACCATCGATTGG
GTCATCAACCACGAGGCCAAGCTTCAGGACGCCCCCGCCATCGGTCGCCAGCGCCCCTGA

Upstream 100 bases:

>100_bases
ACCCGCGACCTAGTCTATGCCTGCACCACCGGCGAAGTCGAAAGGTCTCGAACTCATGAATTTTCCGTATTCACGCCTTC
TACTGCGGGTCAGGGACGGA

Downstream 100 bases:

>100_bases
GGTCGCGCCGAAGACGCCCCGCCAGAAACGACCTGCCAGAAACCTCTAGCCAGAAACCACCGGTCAGAGATCAGTACAGA
GATCAGCGACAAGGCCGGCC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 499; Mature: 498

Protein sequence:

>499_residues
MSRVVFGPPMLAFLPAISLSAFWFGGESALLAVALGLPLTYAVLGGFSKSRETTPGRDELTGFLLAPGFETHVRDVFDRT
EGTGLKSALVVVEIDEFDALVAAHGQDAGDIVMQRVGERMRSILRHRDTIARLGRNRFAICLTPIMQLDLELCIQLAGRL
QFRIEEPIKFGGTSLFVSCSIGICQRHRVPKDAGSSWLDCAVAALDEALVVGPSSIRAYSSDTHVHLDRTVNLMEDAASA
LQNGMIQAWFQPQICTDTGRVSGFEALARWCHPVKGMIPPSAFLPALEHAGLLQKLSQVMVEQALTALKSWDAAGLKVPT
VGVNFATDELRDPGLVNRIRWELDRFGLTPDRLTIEVLETVMTDQPDEVVARNITALGEMGCHIDLDDFGTGHASIASVR
RFRVSRIKIDRSFVTKADHDPEQQKMITAILTMAERLDLKTLAEGVETAGEHALLAQLGCDHVQGFGIGRPMPFDQTIDW
VINHEAKLQDAPAIGRQRP

Sequences:

>Translated_499_residues
MSRVVFGPPMLAFLPAISLSAFWFGGESALLAVALGLPLTYAVLGGFSKSRETTPGRDELTGFLLAPGFETHVRDVFDRT
EGTGLKSALVVVEIDEFDALVAAHGQDAGDIVMQRVGERMRSILRHRDTIARLGRNRFAICLTPIMQLDLELCIQLAGRL
QFRIEEPIKFGGTSLFVSCSIGICQRHRVPKDAGSSWLDCAVAALDEALVVGPSSIRAYSSDTHVHLDRTVNLMEDAASA
LQNGMIQAWFQPQICTDTGRVSGFEALARWCHPVKGMIPPSAFLPALEHAGLLQKLSQVMVEQALTALKSWDAAGLKVPT
VGVNFATDELRDPGLVNRIRWELDRFGLTPDRLTIEVLETVMTDQPDEVVARNITALGEMGCHIDLDDFGTGHASIASVR
RFRVSRIKIDRSFVTKADHDPEQQKMITAILTMAERLDLKTLAEGVETAGEHALLAQLGCDHVQGFGIGRPMPFDQTIDW
VINHEAKLQDAPAIGRQRP
>Mature_498_residues
SRVVFGPPMLAFLPAISLSAFWFGGESALLAVALGLPLTYAVLGGFSKSRETTPGRDELTGFLLAPGFETHVRDVFDRTE
GTGLKSALVVVEIDEFDALVAAHGQDAGDIVMQRVGERMRSILRHRDTIARLGRNRFAICLTPIMQLDLELCIQLAGRLQ
FRIEEPIKFGGTSLFVSCSIGICQRHRVPKDAGSSWLDCAVAALDEALVVGPSSIRAYSSDTHVHLDRTVNLMEDAASAL
QNGMIQAWFQPQICTDTGRVSGFEALARWCHPVKGMIPPSAFLPALEHAGLLQKLSQVMVEQALTALKSWDAAGLKVPTV
GVNFATDELRDPGLVNRIRWELDRFGLTPDRLTIEVLETVMTDQPDEVVARNITALGEMGCHIDLDDFGTGHASIASVRR
FRVSRIKIDRSFVTKADHDPEQQKMITAILTMAERLDLKTLAEGVETAGEHALLAQLGCDHVQGFGIGRPMPFDQTIDWV
INHEAKLQDAPAIGRQRP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=424, Percent_Identity=25.7075471698113, Blast_Score=174, Evalue=8e-45,
Organism=Escherichia coli, GI1787541, Length=388, Percent_Identity=28.6082474226804, Blast_Score=171, Evalue=9e-44,
Organism=Escherichia coli, GI87081845, Length=261, Percent_Identity=29.8850574712644, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI1788502, Length=248, Percent_Identity=33.4677419354839, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI226510982, Length=393, Percent_Identity=25.4452926208651, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1786507, Length=288, Percent_Identity=29.8611111111111, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=27.3469387755102, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1790496, Length=242, Percent_Identity=26.0330578512397, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1787055, Length=315, Percent_Identity=26.3492063492064, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI87082096, Length=287, Percent_Identity=29.616724738676, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI87081980, Length=231, Percent_Identity=25.974025974026, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788849, Length=207, Percent_Identity=26.5700483091787, Blast_Score=82, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 54619; Mature: 54487

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRVVFGPPMLAFLPAISLSAFWFGGESALLAVALGLPLTYAVLGGFSKSRETTPGRDEL
CCCEEECCHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHC
TGFLLAPGFETHVRDVFDRTEGTGLKSALVVVEIDEFDALVAAHGQDAGDIVMQRVGERM
CEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHH
RSILRHRDTIARLGRNRFAICLTPIMQLDLELCIQLAGRLQFRIEEPIKFGGTSLFVSCS
HHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHEEEECCCHHHCCCEEEEEEE
IGICQRHRVPKDAGSSWLDCAVAALDEALVVGPSSIRAYSSDTHVHLDRTVNLMEDAASA
CCHHHHCCCCHHCCCHHHHHHHHHHHHHHEECCHHHEECCCCCEEEEHHHHHHHHHHHHH
LQNGMIQAWFQPQICTDTGRVSGFEALARWCHPVKGMIPPSAFLPALEHAGLLQKLSQVM
HHCCCEEEECCCCEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
VEQALTALKSWDAAGLKVPTVGVNFATDELRDPGLVNRIRWELDRFGLTPDRLTIEVLET
HHHHHHHHHCCCCCCCEECEECCCCCHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
VMTDQPDEVVARNITALGEMGCHIDLDDFGTGHASIASVRRFRVSRIKIDRSFVTKADHD
HHCCCCHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHEECHHHHHCCCCC
PEQQKMITAILTMAERLDLKTLAEGVETAGEHALLAQLGCDHVQGFGIGRPMPFDQTIDW
HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHCCHHHCCCCCCCCCCCCCHHHH
VINHEAKLQDAPAIGRQRP
HCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SRVVFGPPMLAFLPAISLSAFWFGGESALLAVALGLPLTYAVLGGFSKSRETTPGRDEL
CCEEECCHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHC
TGFLLAPGFETHVRDVFDRTEGTGLKSALVVVEIDEFDALVAAHGQDAGDIVMQRVGERM
CEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHH
RSILRHRDTIARLGRNRFAICLTPIMQLDLELCIQLAGRLQFRIEEPIKFGGTSLFVSCS
HHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHEEEECCCHHHCCCEEEEEEE
IGICQRHRVPKDAGSSWLDCAVAALDEALVVGPSSIRAYSSDTHVHLDRTVNLMEDAASA
CCHHHHCCCCHHCCCHHHHHHHHHHHHHHEECCHHHEECCCCCEEEEHHHHHHHHHHHHH
LQNGMIQAWFQPQICTDTGRVSGFEALARWCHPVKGMIPPSAFLPALEHAGLLQKLSQVM
HHCCCEEEECCCCEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
VEQALTALKSWDAAGLKVPTVGVNFATDELRDPGLVNRIRWELDRFGLTPDRLTIEVLET
HHHHHHHHHCCCCCCCEECEECCCCCHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
VMTDQPDEVVARNITALGEMGCHIDLDDFGTGHASIASVRRFRVSRIKIDRSFVTKADHD
HHCCCCHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHEECHHHHHCCCCC
PEQQKMITAILTMAERLDLKTLAEGVETAGEHALLAQLGCDHVQGFGIGRPMPFDQTIDW
HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHCCHHHCCCCCCCCCCCCCHHHH
VINHEAKLQDAPAIGRQRP
HCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]