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The map label for this gene is oxaA

Identifier: 99080148

GI number: 99080148

Start: 312099

End: 313925

Strand: Reverse

Name: oxaA

Synonym: TM1040_0307

Alternate gene names: 99080148

Gene position: 313925-312099 (Counterclockwise)

Preceding gene: 99080149

Following gene: 99080147

Centisome position: 9.81

GC content: 61.25

Gene sequence:

>1827_bases
ATGGACGATCAGAACAAGAATCTACTGCTCGCAACCGCTCTGAGTTTCCTGGTGATCCTCGGCTGGTATTTCTTCTTCCC
CCCGCCGGAAGAGGCGCCTCAGCCTGCGACTGAAGTCACTGAAACCGCGCCCCAAGGCGATACGACCGCACCTGCGGCCG
CGCCCAGTGCCGGTGCGGCAACCGCCGAGGTCGACGCGGCCGCCGCCGAAACCGAAATCACCGAAGACGTCCCGCGCCTC
ACGATCGACACCCCGCGTGTCGAGGGCTCCATCTCTCTCAAAGGGGGCCGGATCGACGATCTGCGGCTCAAGGACTACCG
CGAGACGCTGGATGACGATTCGCCAATCGTGACGCTCTTGTCGCCTGCCGGTCAGCCCCATGCCTACTACGCGCTTTACG
GCTGGGCGCCGGGGGCCGGTCTTGGCATCGAAGATGTGCCCACCGCCAATACGCTCTGGCAGGCCGAAGCGGGCGCGACC
CTGACCCCAGACACCCCGGTGACGCTCACTTGGGACAACGGCAAGGGCCTGACCTTCTCGCGCGAAGTTTCCATCGATGA
GGACTATATGTTCTCGATCACCCAGTCGGTGACCAATAGCTCCGGCGCGTCCGTCGCGCTGGCGCCCTACGGCACCCTCG
CCCGGCATGGCGAACCCGCCAACCTCGAGAACTTCTTTGTTCTGCACGAGGGCGTTGTGGGCATGGCCGATGGCGAGCTG
TCGGAAATCGACTATGACGACATGACCGATTTCGACCCCGATCCCCGCGACGGGTCGCGCGCGCAGGTCAACACCGTGAC
CGAGAACGGCTGGATTGGCTTTACCGGCCACTACTGGATGTCGACGCTGATCCCCGCCCCCGGTGAGGCCTTCCGCGCCA
TCGCAAAATACGACGAACGCCGCGACATCTACCAGACGGATGTGGTTCTGCCGACCGTGACCCTCGCCGCCGGCGAGAGC
ACCAGCGCGAACACCCAGCTGTTTGCGGGCGCGAAGGAATGGGCCACCATCCGCGAGTATGAGCGTGCAGGCATCGAAGG
CTTCCTCGACTCGATCGACTGGGGTTGGTTCTTCTTCTTCACCAAGCCGATCTTTGCCGTGCTGCACTGGCTCAATGCCG
CGATCGGCAACATGGGTGTTGCAATCATCGCGCTGACGTTCCTGTTGAAAATCCTCGTCTTCCCGCTGGCCTATAAATCC
TACGCCTCGATGGCGCGGATGAAGGAACTGCAGCCCGAGATGGAAAAGCTGCGCGAACGCGCGGGCGATGACCGTCAGAA
GATGCAAAAGGAGATGATGGAGCTCTACAAGCGCGAGAAAGTCAATCCGGCCGCAGGCTGTCTGCCGATCCTGATCCAGA
TCCCGATCTTCTTCTCGCTCTACAAGGTGATCTTCGTGACACTCGAGCTGCGCCATGCAGCCTTCTTTGGTCCCTTCCAG
GATCTCTCGGTGCCCGATCCCACCTCGCTCTTCAACCTCTTTGGCCTGCTGCCCTGGGCGGCACCGGCCCCCGACAGCCT
GCTGTCGCTGGTCTTCATCGGCATCCTGCCGATCCTCCTCGGGGTCTCCATGTGGGTACAGCAGAAACTGAACCCTGCCC
CGACGGATGAAACCCAGCGCATGATCTTTGCGTGGATGCCTTGGGTCTTCATGTTCATGCTGGGCGGCTTTGCCTCGGGC
CTCGTGGTCTACTGGATCACCAACAACGTGATCACCTTCACCCAGCAGTATCTGATCATGCGCTCGCACGGCTATACCCC
TGATGTCTTTGGCAATATCAAGTCAGGCTTCAAGAAGGACAAAGCCGAGAAAGCCGAGAAGAAATGA

Upstream 100 bases:

>100_bases
CGGCCCACAGTTGGATGCGAGACCCGGATTTCCCTTGACCTTCCGGACCGACCTCTGTTGAACCACACCCTGACTTTGCA
TGCATGAGGTGGCTGTCCAG

Downstream 100 bases:

>100_bases
CAGCAACTGTCAGACAAATGTGGCGGCACCCGATCAAGGGGATCGGGGCCGAACCACTGACAGAGGTCCGCTTGGAAACA
GGCGGGCCTATGCCGTTGGA

Product: putative inner membrane protein translocase component YidC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 608; Mature: 608

Protein sequence:

>608_residues
MDDQNKNLLLATALSFLVILGWYFFFPPPEEAPQPATEVTETAPQGDTTAPAAAPSAGAATAEVDAAAAETEITEDVPRL
TIDTPRVEGSISLKGGRIDDLRLKDYRETLDDDSPIVTLLSPAGQPHAYYALYGWAPGAGLGIEDVPTANTLWQAEAGAT
LTPDTPVTLTWDNGKGLTFSREVSIDEDYMFSITQSVTNSSGASVALAPYGTLARHGEPANLENFFVLHEGVVGMADGEL
SEIDYDDMTDFDPDPRDGSRAQVNTVTENGWIGFTGHYWMSTLIPAPGEAFRAIAKYDERRDIYQTDVVLPTVTLAAGES
TSANTQLFAGAKEWATIREYERAGIEGFLDSIDWGWFFFFTKPIFAVLHWLNAAIGNMGVAIIALTFLLKILVFPLAYKS
YASMARMKELQPEMEKLRERAGDDRQKMQKEMMELYKREKVNPAAGCLPILIQIPIFFSLYKVIFVTLELRHAAFFGPFQ
DLSVPDPTSLFNLFGLLPWAAPAPDSLLSLVFIGILPILLGVSMWVQQKLNPAPTDETQRMIFAWMPWVFMFMLGGFASG
LVVYWITNNVITFTQQYLIMRSHGYTPDVFGNIKSGFKKDKAEKAEKK

Sequences:

>Translated_608_residues
MDDQNKNLLLATALSFLVILGWYFFFPPPEEAPQPATEVTETAPQGDTTAPAAAPSAGAATAEVDAAAAETEITEDVPRL
TIDTPRVEGSISLKGGRIDDLRLKDYRETLDDDSPIVTLLSPAGQPHAYYALYGWAPGAGLGIEDVPTANTLWQAEAGAT
LTPDTPVTLTWDNGKGLTFSREVSIDEDYMFSITQSVTNSSGASVALAPYGTLARHGEPANLENFFVLHEGVVGMADGEL
SEIDYDDMTDFDPDPRDGSRAQVNTVTENGWIGFTGHYWMSTLIPAPGEAFRAIAKYDERRDIYQTDVVLPTVTLAAGES
TSANTQLFAGAKEWATIREYERAGIEGFLDSIDWGWFFFFTKPIFAVLHWLNAAIGNMGVAIIALTFLLKILVFPLAYKS
YASMARMKELQPEMEKLRERAGDDRQKMQKEMMELYKREKVNPAAGCLPILIQIPIFFSLYKVIFVTLELRHAAFFGPFQ
DLSVPDPTSLFNLFGLLPWAAPAPDSLLSLVFIGILPILLGVSMWVQQKLNPAPTDETQRMIFAWMPWVFMFMLGGFASG
LVVYWITNNVITFTQQYLIMRSHGYTPDVFGNIKSGFKKDKAEKAEKK
>Mature_608_residues
MDDQNKNLLLATALSFLVILGWYFFFPPPEEAPQPATEVTETAPQGDTTAPAAAPSAGAATAEVDAAAAETEITEDVPRL
TIDTPRVEGSISLKGGRIDDLRLKDYRETLDDDSPIVTLLSPAGQPHAYYALYGWAPGAGLGIEDVPTANTLWQAEAGAT
LTPDTPVTLTWDNGKGLTFSREVSIDEDYMFSITQSVTNSSGASVALAPYGTLARHGEPANLENFFVLHEGVVGMADGEL
SEIDYDDMTDFDPDPRDGSRAQVNTVTENGWIGFTGHYWMSTLIPAPGEAFRAIAKYDERRDIYQTDVVLPTVTLAAGES
TSANTQLFAGAKEWATIREYERAGIEGFLDSIDWGWFFFFTKPIFAVLHWLNAAIGNMGVAIIALTFLLKILVFPLAYKS
YASMARMKELQPEMEKLRERAGDDRQKMQKEMMELYKREKVNPAAGCLPILIQIPIFFSLYKVIFVTLELRHAAFFGPFQ
DLSVPDPTSLFNLFGLLPWAAPAPDSLLSLVFIGILPILLGVSMWVQQKLNPAPTDETQRMIFAWMPWVFMFMLGGFASG
LVVYWITNNVITFTQQYLIMRSHGYTPDVFGNIKSGFKKDKAEKAEKK

Specific function: Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory chain complexes. Involved in integration of membrane proteins that insert dependently and indepe

COG id: COG0706

COG function: function code U; Preprotein translocase subunit YidC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OXA1/oxaA family. Type 1 subfamily

Homologues:

Organism=Escherichia coli, GI1790140, Length=524, Percent_Identity=29.1984732824427, Blast_Score=215, Evalue=6e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OXAA_SILST (Q1GJX6)

Other databases:

- EMBL:   CP000377
- RefSeq:   YP_612302.1
- STRING:   Q1GJX6
- GeneID:   4077130
- GenomeReviews:   CP000377_GR
- KEGG:   sit:TM1040_0307
- NMPDR:   fig|292414.1.peg.2510
- eggNOG:   COG0706
- HOGENOM:   HBG507812
- OMA:   FVTIEMR
- PhylomeDB:   Q1GJX6
- ProtClustDB:   PRK01318
- BioCyc:   SSP292414:TM1040_0307-MONOMER
- HAMAP:   MF_01810
- InterPro:   IPR019998
- InterPro:   IPR001708
- PANTHER:   PTHR12428
- PRINTS:   PR00701
- PRINTS:   PR01900
- TIGRFAMs:   TIGR03593
- TIGRFAMs:   TIGR03592

Pfam domain/function: PF02096 60KD_IMP

EC number: NA

Molecular weight: Translated: 67197; Mature: 67197

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xb60acc0)-; HASH(0xde46eb8)-; HASH(0xe0c545c)-; HASH(0xcf9f338)-; HASH(0xde185ec)-; HASH(0xcf840bc)-;

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDQNKNLLLATALSFLVILGWYFFFPPPEEAPQPATEVTETAPQGDTTAPAAAPSAGAA
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
TAEVDAAAAETEITEDVPRLTIDTPRVEGSISLKGGRIDDLRLKDYRETLDDDSPIVTLL
HHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCEEEEE
SPAGQPHAYYALYGWAPGAGLGIEDVPTANTLWQAEAGATLTPDTPVTLTWDNGKGLTFS
CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCEECCCCCEEEEEECCCCCEEE
REVSIDEDYMFSITQSVTNSSGASVALAPYGTLARHGEPANLENFFVLHEGVVGMADGEL
EECCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCCCCCCEEEEEECCEEECCCCCC
SEIDYDDMTDFDPDPRDGSRAQVNTVTENGWIGFTGHYWMSTLIPAPGEAFRAIAKYDER
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHH
RDIYQTDVVLPTVTLAAGESTSANTQLFAGAKEWATIREYERAGIEGFLDSIDWGWFFFF
CCHHHHCEEEEEEEEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
TKPIFAVLHWLNAAIGNMGVAIIALTFLLKILVFPLAYKSYASMARMKELQPEMEKLRER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGDDRQKMQKEMMELYKREKVNPAAGCLPILIQIPIFFSLYKVIFVTLELRHAAFFGPFQ
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DLSVPDPTSLFNLFGLLPWAAPAPDSLLSLVFIGILPILLGVSMWVQQKLNPAPTDETQR
CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
MIFAWMPWVFMFMLGGFASGLVVYWITNNVITFTQQYLIMRSHGYTPDVFGNIKSGFKKD
HHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
KAEKAEKK
HHHHHCCH
>Mature Secondary Structure
MDDQNKNLLLATALSFLVILGWYFFFPPPEEAPQPATEVTETAPQGDTTAPAAAPSAGAA
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
TAEVDAAAAETEITEDVPRLTIDTPRVEGSISLKGGRIDDLRLKDYRETLDDDSPIVTLL
HHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCEEEEE
SPAGQPHAYYALYGWAPGAGLGIEDVPTANTLWQAEAGATLTPDTPVTLTWDNGKGLTFS
CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCEECCCCCEEEEEECCCCCEEE
REVSIDEDYMFSITQSVTNSSGASVALAPYGTLARHGEPANLENFFVLHEGVVGMADGEL
EECCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCCCCCCEEEEEECCEEECCCCCC
SEIDYDDMTDFDPDPRDGSRAQVNTVTENGWIGFTGHYWMSTLIPAPGEAFRAIAKYDER
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHH
RDIYQTDVVLPTVTLAAGESTSANTQLFAGAKEWATIREYERAGIEGFLDSIDWGWFFFF
CCHHHHCEEEEEEEEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
TKPIFAVLHWLNAAIGNMGVAIIALTFLLKILVFPLAYKSYASMARMKELQPEMEKLRER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGDDRQKMQKEMMELYKREKVNPAAGCLPILIQIPIFFSLYKVIFVTLELRHAAFFGPFQ
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DLSVPDPTSLFNLFGLLPWAAPAPDSLLSLVFIGILPILLGVSMWVQQKLNPAPTDETQR
CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
MIFAWMPWVFMFMLGGFASGLVVYWITNNVITFTQQYLIMRSHGYTPDVFGNIKSGFKKD
HHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
KAEKAEKK
HHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA