Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99080141

Identifier: 99080141

GI number: 99080141

Start: 306183

End: 306878

Strand: Reverse

Name: 99080141

Synonym: TM1040_0300

Alternate gene names: NA

Gene position: 306878-306183 (Counterclockwise)

Preceding gene: 99080142

Following gene: 99080140

Centisome position: 9.59

GC content: 62.79

Gene sequence:

>696_bases
ATGGCAGCCCCTCAGTTTTCTCCAGACCTTCAAAACCGATACGACCAGCTCTCGGCAGCGCTCCCTCCGCTTGGTTTGAT
GGTTTATGGCAGTGTTCACCCTAAACGTGTGCCTGTGCCCGGCTATGATAGCGGCACATTGATCCTGATCGGCGCCGCGT
CTACCTTTTGGCAGGTGCTGTCAACCGCCCCCGAGGGCCGCGACAACAGGCCGGATCCGGTTGATCGCTACTCCCGCCGG
GTGATTGAAAGACTGGCGCACGACCATGGGGCACAGAAGGCAGAATTTCCCTTTGGCGGGCCACCCTACGCGCCATTTGT
CGCCTGGGCGCTCGCCTCGGGGCGCGCCTTCACATCTCCGTCGCAACTGCTGGTGCATGATGAGGTCGGCATGCTGATTT
CCTACCGCGGAGCCCTGTTTTTTGACGAGACATTTGCGACCCCACCGCCCCGGCTTTCCCGCTCTCCCTGTGCAAGCTGC
GCCGCGCGCCCTTGCCTCTCGGCCTGCCCCGTACACGCCTTGGTTGACGAAGGCCCCTATAAACTGGCAGCCTGCCACAA
CCACCTGGACACACCACAGGGGGCGGAGTGCATGGCATCGGGCTGCATCGCGCGCCGGGCCTGCCCGCTCAGTGACGGTG
CCGGACGCCAGCCTGCGCAATCTGCCCACCACATGAGATATTTTCATCGCCCATGA

Upstream 100 bases:

>100_bases
GGGCGTCTCGGGACCACGACCCGGCCGATACAAATGCCCCGCGCAGCCCTTGTCTGCGCGCAGGCTTGCCAGAACGCCCG
GTTCAGGGTCTTCTGGGGCA

Downstream 100 bases:

>100_bases
CCTGTACCCTGTTTCTGACCCGCCACGCAAAATCCGCCTGGAACACCGACGCCCCCAGCGACCACGCGCGCCCGCTGAAC
ACGCGCGGCCGCCGCTCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MAAPQFSPDLQNRYDQLSAALPPLGLMVYGSVHPKRVPVPGYDSGTLILIGAASTFWQVLSTAPEGRDNRPDPVDRYSRR
VIERLAHDHGAQKAEFPFGGPPYAPFVAWALASGRAFTSPSQLLVHDEVGMLISYRGALFFDETFATPPPRLSRSPCASC
AARPCLSACPVHALVDEGPYKLAACHNHLDTPQGAECMASGCIARRACPLSDGAGRQPAQSAHHMRYFHRP

Sequences:

>Translated_231_residues
MAAPQFSPDLQNRYDQLSAALPPLGLMVYGSVHPKRVPVPGYDSGTLILIGAASTFWQVLSTAPEGRDNRPDPVDRYSRR
VIERLAHDHGAQKAEFPFGGPPYAPFVAWALASGRAFTSPSQLLVHDEVGMLISYRGALFFDETFATPPPRLSRSPCASC
AARPCLSACPVHALVDEGPYKLAACHNHLDTPQGAECMASGCIARRACPLSDGAGRQPAQSAHHMRYFHRP
>Mature_230_residues
AAPQFSPDLQNRYDQLSAALPPLGLMVYGSVHPKRVPVPGYDSGTLILIGAASTFWQVLSTAPEGRDNRPDPVDRYSRRV
IERLAHDHGAQKAEFPFGGPPYAPFVAWALASGRAFTSPSQLLVHDEVGMLISYRGALFFDETFATPPPRLSRSPCASCA
ARPCLSACPVHALVDEGPYKLAACHNHLDTPQGAECMASGCIARRACPLSDGAGRQPAQSAHHMRYFHRP

Specific function: Unknown

COG id: COG1145

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24989; Mature: 24857

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAPQFSPDLQNRYDQLSAALPPLGLMVYGSVHPKRVPVPGYDSGTLILIGAASTFWQVL
CCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHHH
STAPEGRDNRPDPVDRYSRRVIERLAHDHGAQKAEFPFGGPPYAPFVAWALASGRAFTSP
HCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
SQLLVHDEVGMLISYRGALFFDETFATPPPRLSRSPCASCAARPCLSACPVHALVDEGPY
CCEEEECCCCHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHCCCCE
KLAACHNHLDTPQGAECMASGCIARRACPLSDGAGRQPAQSAHHMRYFHRP
EHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
AAPQFSPDLQNRYDQLSAALPPLGLMVYGSVHPKRVPVPGYDSGTLILIGAASTFWQVL
CCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHHH
STAPEGRDNRPDPVDRYSRRVIERLAHDHGAQKAEFPFGGPPYAPFVAWALASGRAFTSP
HCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
SQLLVHDEVGMLISYRGALFFDETFATPPPRLSRSPCASCAARPCLSACPVHALVDEGPY
CCEEEECCCCHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHCCCCE
KLAACHNHLDTPQGAECMASGCIARRACPLSDGAGRQPAQSAHHMRYFHRP
EHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA