| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99080140
Identifier: 99080140
GI number: 99080140
Start: 305689
End: 306186
Strand: Reverse
Name: 99080140
Synonym: TM1040_0299
Alternate gene names: NA
Gene position: 306186-305689 (Counterclockwise)
Preceding gene: 99080141
Following gene: 99080139
Centisome position: 9.57
GC content: 64.26
Gene sequence:
>498_bases ATGACCTGTACCCTGTTTCTGACCCGCCACGCAAAATCCGCCTGGAACACCGACGCCCCCAGCGACCACGCGCGCCCGCT GAACACGCGCGGCCGCCGCTCGGCCGCCGCTCTGGGCGCCTGGGTCCGCGAACAGAGCAGCCCGCCTCTGCAAGTGCTCT CCTCCTCGGCGCAGCGCACCCGCGAGACCTATGATCTCATGGCACTCACCGCTCCGGCGACCTTCACCGAGCGCCTCTAT CATGCCACGCCCGAGATCCTCTACGATGTGCTGCGCGAGGCCACCCAGCCCAATGTGCTGCTGCTGGGCCATAATCCGGG TCTTTTGGCCTTTGCTCATGATATCGTCAAACATCCGCCGCCACACTCGCGGTTCGACGACTACCCCACAGGGGCAACTC TGCTGGTCGAGTTCGACATCGCGCATTGGGCCGAGATGCAACCGCACAGCGGCCGGGTGATCGATTTTGTGGTCTCCCGC GAACTCTTGGGAGAATAA
Upstream 100 bases:
>100_bases TGGCATCGGGCTGCATCGCGCGCCGGGCCTGCCCGCTCAGTGACGGTGCCGGACGCCAGCCTGCGCAATCTGCCCACCAC ATGAGATATTTTCATCGCCC
Downstream 100 bases:
>100_bases CCGCGCCTTGCCTGCAGAGGCCCCGCGCGGTAGGCTCTAGCTCAGACACAGGAGATTTGATGTCCCGTTGATACCGGCGC AACCGCGCCAGTGCTGCACC
Product: putative phosphohistidine phosphatase, SixA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 165; Mature: 164
Protein sequence:
>165_residues MTCTLFLTRHAKSAWNTDAPSDHARPLNTRGRRSAAALGAWVREQSSPPLQVLSSSAQRTRETYDLMALTAPATFTERLY HATPEILYDVLREATQPNVLLLGHNPGLLAFAHDIVKHPPPHSRFDDYPTGATLLVEFDIAHWAEMQPHSGRVIDFVVSR ELLGE
Sequences:
>Translated_165_residues MTCTLFLTRHAKSAWNTDAPSDHARPLNTRGRRSAAALGAWVREQSSPPLQVLSSSAQRTRETYDLMALTAPATFTERLY HATPEILYDVLREATQPNVLLLGHNPGLLAFAHDIVKHPPPHSRFDDYPTGATLLVEFDIAHWAEMQPHSGRVIDFVVSR ELLGE >Mature_164_residues TCTLFLTRHAKSAWNTDAPSDHARPLNTRGRRSAAALGAWVREQSSPPLQVLSSSAQRTRETYDLMALTAPATFTERLYH ATPEILYDVLREATQPNVLLLGHNPGLLAFAHDIVKHPPPHSRFDDYPTGATLLVEFDIAHWAEMQPHSGRVIDFVVSRE LLGE
Specific function: Unknown
COG id: COG2062
COG function: function code T; Phosphohistidine phosphatase SixA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sixA phosphatase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013078 [H]
Pfam domain/function: PF00300 PGAM [H]
EC number: NA
Molecular weight: Translated: 18419; Mature: 18288
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTCTLFLTRHAKSAWNTDAPSDHARPLNTRGRRSAAALGAWVREQSSPPLQVLSSSAQRT CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH RETYDLMALTAPATFTERLYHATPEILYDVLREATQPNVLLLGHNPGLLAFAHDIVKHPP HHHHHHHEEECCHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCC PHSRFDDYPTGATLLVEFDIAHWAEMQPHSGRVIDFVVSRELLGE CCCCCCCCCCCCEEEEEECCHHHHHCCCCCCCEEHHEEHHHHHCC >Mature Secondary Structure TCTLFLTRHAKSAWNTDAPSDHARPLNTRGRRSAAALGAWVREQSSPPLQVLSSSAQRT EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH RETYDLMALTAPATFTERLYHATPEILYDVLREATQPNVLLLGHNPGLLAFAHDIVKHPP HHHHHHHEEECCHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCC PHSRFDDYPTGATLLVEFDIAHWAEMQPHSGRVIDFVVSRELLGE CCCCCCCCCCCCEEEEEECCHHHHHCCCCCCCEEHHEEHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]