Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080125

Identifier: 99080125

GI number: 99080125

Start: 289070

End: 289723

Strand: Direct

Name: 99080125

Synonym: TM1040_0284

Alternate gene names: NA

Gene position: 289070-289723 (Clockwise)

Preceding gene: 99080122

Following gene: 99080127

Centisome position: 9.03

GC content: 61.62

Gene sequence:

>654_bases
ATGCGCACCCCACAGACCAAACCCCTCCTGACCCTGTTTGATCTTCAAGGGTTGGTGTTCGGGGTATTGATGTGCTCGCT
CGGGGTGGTGTTCCTCAAGGCGGCAGGGCTAGTGACGGGACAGACGGCAGGCATTGCGCTCTTGTTGTCCTATGTGCTGC
CGCTCGGCTTTGGGCCGTTGTTTTTTATGATCGGTCTGCCGTTTCTGGTGCTGGCGTGGGTCAAACGGGGCGCGGTCTTT
GCCCTGCGCACGGTCCTCGTGGTGCTCGGGATCTCTGCCGGGGCGCAGATCCTGCCACTCTACCTGAGCTTTGACACGCT
GCACATTGGGATTGCTGCGCTTTTGGGCGGGGCCTGTAGCGGGGCGGGGCTCATTGCGATCTTTCGCCACAACGCTTCGG
CGGGGGGGATGACGATCCTCGGGATCATCATCGAGCACCGTACCGGCTTTAAGGCGGGCTGGTTTCAGCTTGGCGTTGAT
GCTTGCGTTTTTGCGGTCTCGGCTCTGGTGCTGTCGCCCGAGCAGCTGATCTATTCCTTTGTCGGGGCGATGTTCACCAA
CCTCTGCATCGTGTGGAACTTTGACGTTGCCCAAAGCGGCACGGGCCGCCCCGGATACGGGCGCGCGGCCCCAAAGGGCG
CTAGCGACGACTGA

Upstream 100 bases:

>100_bases
TGATCTTTGCCGTCACGGCCGAGTCCCCCCGGCGGCCTCGGCGATTGTTTTATGTCCTGCAGCGGCTTATCACGGGAACA
CAGCCTCAAGGAGACCGCTG

Downstream 100 bases:

>100_bases
AGGCCAGGATGATCTGGCGCGCCTGACGCTGGAACAGGCCGGGACCCTTGGGGGCGCCGCCGCGCGCCTCGACCTCTGCG
ATCACCCGCCGTGCAAGCCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MRTPQTKPLLTLFDLQGLVFGVLMCSLGVVFLKAAGLVTGQTAGIALLLSYVLPLGFGPLFFMIGLPFLVLAWVKRGAVF
ALRTVLVVLGISAGAQILPLYLSFDTLHIGIAALLGGACSGAGLIAIFRHNASAGGMTILGIIIEHRTGFKAGWFQLGVD
ACVFAVSALVLSPEQLIYSFVGAMFTNLCIVWNFDVAQSGTGRPGYGRAAPKGASDD

Sequences:

>Translated_217_residues
MRTPQTKPLLTLFDLQGLVFGVLMCSLGVVFLKAAGLVTGQTAGIALLLSYVLPLGFGPLFFMIGLPFLVLAWVKRGAVF
ALRTVLVVLGISAGAQILPLYLSFDTLHIGIAALLGGACSGAGLIAIFRHNASAGGMTILGIIIEHRTGFKAGWFQLGVD
ACVFAVSALVLSPEQLIYSFVGAMFTNLCIVWNFDVAQSGTGRPGYGRAAPKGASDD
>Mature_217_residues
MRTPQTKPLLTLFDLQGLVFGVLMCSLGVVFLKAAGLVTGQTAGIALLLSYVLPLGFGPLFFMIGLPFLVLAWVKRGAVF
ALRTVLVVLGISAGAQILPLYLSFDTLHIGIAALLGGACSGAGLIAIFRHNASAGGMTILGIIIEHRTGFKAGWFQLGVD
ACVFAVSALVLSPEQLIYSFVGAMFTNLCIVWNFDVAQSGTGRPGYGRAAPKGASDD

Specific function: Unknown

COG id: COG1284

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22677; Mature: 22677

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTPQTKPLLTLFDLQGLVFGVLMCSLGVVFLKAAGLVTGQTAGIALLLSYVLPLGFGPL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHH
FFMIGLPFLVLAWVKRGAVFALRTVLVVLGISAGAQILPLYLSFDTLHIGIAALLGGACS
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHHCCCCC
GAGLIAIFRHNASAGGMTILGIIIEHRTGFKAGWFQLGVDACVFAVSALVLSPEQLIYSF
CCCEEEEEECCCCCCCCEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
VGAMFTNLCIVWNFDVAQSGTGRPGYGRAAPKGASDD
HHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRTPQTKPLLTLFDLQGLVFGVLMCSLGVVFLKAAGLVTGQTAGIALLLSYVLPLGFGPL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHH
FFMIGLPFLVLAWVKRGAVFALRTVLVVLGISAGAQILPLYLSFDTLHIGIAALLGGACS
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHHCCCCC
GAGLIAIFRHNASAGGMTILGIIIEHRTGFKAGWFQLGVDACVFAVSALVLSPEQLIYSF
CCCEEEEEECCCCCCCCEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
VGAMFTNLCIVWNFDVAQSGTGRPGYGRAAPKGASDD
HHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA