| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080122
Identifier: 99080122
GI number: 99080122
Start: 286665
End: 287573
Strand: Direct
Name: 99080122
Synonym: TM1040_0281
Alternate gene names: NA
Gene position: 286665-287573 (Clockwise)
Preceding gene: 99080121
Following gene: 99080125
Centisome position: 8.96
GC content: 57.43
Gene sequence:
>909_bases ATGTTTAATCAGATTATCACGAAGGCCGCGTTCATACTGGGTCTGAGCCTCGCAGGGGCGCTCCCTGCTGGTTCAGAAAC TGTCGCAGGGCAAGAAGATGCCGCATACCTCTCTGCACGCGAGGATTGGTTGGCGGGAAACGACATCAAGGCACTTAAAG CTCTTGGTGTTCTGGCAAGGCAAGGCAACACCGCTGCCCAAATACTTTTGTCACGGATCGCCGCATCGAAGCTTACACAT CAGCATGTGACGGCAGATTTACCGCGTCGCGAGCGCATCGCCTTGCTGCGCAAGGAACAGGGATTGTCTGGCAAGGATTG GCTGACAGAGGCGCGGTCTTCTTCTGAACTTGTAGAGGCGCTTTGGACATTGAACAGAACCCCGGATGCGATGGACGCAG GACAAGCTGTCGAAATCCTTTGGGACCACGGCGAGGCCAAAGCCGCAATCAATATGATGCTTGAAGCGTGGTCTCGGGGC GAAGAGGATAGCGTTCTGAAACGGATCGAAGCGAGCAGTCACGATCTCGGACCCGATGGGGCGCAGATGCTGGCCTTCCT GAAAGGAGATATTGACCAATGGCGAGTGGACGAGCTGCGCGGGCGGCTTGCACTTGAAGGGTTGCTAGAGCCGCTCACCA GTCTCTCGGATGCGTCCCGCTTGGCCAAGGTGGAGGAGATTCCTTCTCTGGAGCCATTGAGCAAATATTGCGCGGCCACC TGTCCCGAGTCCGTTGCGCTTTGCCTCAGATCGGGGCTTCGTGCTGCAACCGTTGCCGGTCGCTTCCCACAGCCTTTCGC AAGCCCGTCGCAATCCCTCATTCCCGACGAGGAATACTGGGACAGTGCCCGATTTCAGGGTGATTTCTCGGCGCTCATGA AGGCCGGAGGTGGGTTGACCTGCGAGTAG
Upstream 100 bases:
>100_bases GTCTGACTTTCCCCCGCTCTGGCAACAGGGCGGGGGTTTTTGCTTTTCGGACCCGACCTTGGCAGCTAACATCCGCTCAA GGTACATTTTTGGGCAAGGC
Downstream 100 bases:
>100_bases CCGCAGCGATGCGCGCTACTCTGCCGCCTTTTTCACGAACTGGCTCTTGAGGCCCATCTGGCCGATGCCGGGCACTTTGC AGTCGATGTCGTGATCTCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 302; Mature: 302
Protein sequence:
>302_residues MFNQIITKAAFILGLSLAGALPAGSETVAGQEDAAYLSAREDWLAGNDIKALKALGVLARQGNTAAQILLSRIAASKLTH QHVTADLPRRERIALLRKEQGLSGKDWLTEARSSSELVEALWTLNRTPDAMDAGQAVEILWDHGEAKAAINMMLEAWSRG EEDSVLKRIEASSHDLGPDGAQMLAFLKGDIDQWRVDELRGRLALEGLLEPLTSLSDASRLAKVEEIPSLEPLSKYCAAT CPESVALCLRSGLRAATVAGRFPQPFASPSQSLIPDEEYWDSARFQGDFSALMKAGGGLTCE
Sequences:
>Translated_302_residues MFNQIITKAAFILGLSLAGALPAGSETVAGQEDAAYLSAREDWLAGNDIKALKALGVLARQGNTAAQILLSRIAASKLTH QHVTADLPRRERIALLRKEQGLSGKDWLTEARSSSELVEALWTLNRTPDAMDAGQAVEILWDHGEAKAAINMMLEAWSRG EEDSVLKRIEASSHDLGPDGAQMLAFLKGDIDQWRVDELRGRLALEGLLEPLTSLSDASRLAKVEEIPSLEPLSKYCAAT CPESVALCLRSGLRAATVAGRFPQPFASPSQSLIPDEEYWDSARFQGDFSALMKAGGGLTCE >Mature_302_residues MFNQIITKAAFILGLSLAGALPAGSETVAGQEDAAYLSAREDWLAGNDIKALKALGVLARQGNTAAQILLSRIAASKLTH QHVTADLPRRERIALLRKEQGLSGKDWLTEARSSSELVEALWTLNRTPDAMDAGQAVEILWDHGEAKAAINMMLEAWSRG EEDSVLKRIEASSHDLGPDGAQMLAFLKGDIDQWRVDELRGRLALEGLLEPLTSLSDASRLAKVEEIPSLEPLSKYCAAT CPESVALCLRSGLRAATVAGRFPQPFASPSQSLIPDEEYWDSARFQGDFSALMKAGGGLTCE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32584; Mature: 32584
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: PS00037 MYB_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFNQIITKAAFILGLSLAGALPAGSETVAGQEDAAYLSAREDWLAGNDIKALKALGVLAR CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH QGNTAAQILLSRIAASKLTHQHVTADLPRRERIALLRKEQGLSGKDWLTEARSSSELVEA CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHH LWTLNRTPDAMDAGQAVEILWDHGEAKAAINMMLEAWSRGEEDSVLKRIEASSHDLGPDG HHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCH AQMLAFLKGDIDQWRVDELRGRLALEGLLEPLTSLSDASRLAKVEEIPSLEPLSKYCAAT HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC CPESVALCLRSGLRAATVAGRFPQPFASPSQSLIPDEEYWDSARFQGDFSALMKAGGGLT CHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCCC CE CC >Mature Secondary Structure MFNQIITKAAFILGLSLAGALPAGSETVAGQEDAAYLSAREDWLAGNDIKALKALGVLAR CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH QGNTAAQILLSRIAASKLTHQHVTADLPRRERIALLRKEQGLSGKDWLTEARSSSELVEA CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHH LWTLNRTPDAMDAGQAVEILWDHGEAKAAINMMLEAWSRGEEDSVLKRIEASSHDLGPDG HHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCH AQMLAFLKGDIDQWRVDELRGRLALEGLLEPLTSLSDASRLAKVEEIPSLEPLSKYCAAT HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC CPESVALCLRSGLRAATVAGRFPQPFASPSQSLIPDEEYWDSARFQGDFSALMKAGGGLT CHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCCC CE CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA