| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is aroG [H]
Identifier: 99080127
GI number: 99080127
Start: 291466
End: 292560
Strand: Direct
Name: aroG [H]
Synonym: TM1040_0286
Alternate gene names: 99080127
Gene position: 291466-292560 (Clockwise)
Preceding gene: 99080125
Following gene: 99080128
Centisome position: 9.11
GC content: 64.57
Gene sequence:
>1095_bases ATGACCACCCTCTCTCAGACACCGACCCATGATCTGCGCATCACCGACATGCAGGAATTGATCTGCCCCGAAGCCCTCGC GGTGAAACACCCGCTGACAGATGCCGCGCGCGAAACCGTGCTCTCGGCGCGCGCCAGCATCCAGAAGATCCTGCATGGCG CCGACGACCGGCTGGTCGTCGTGGTCGGCCCCTGTTCGATCCACGACCCGGAGGCCGCGCTGGACTATGCGCGCCGTCTT GCGCCGCTGCGCGCCGAGCTGGGCGATGCGCTTGAGATCGTGATGCGGGTCTACTTTGAAAAACCGCGCACCATCGCGGG CTGGAAGGGGCTGATCAACGACCCCAACCTTGATGGGTCTTTCCGCATCAACAAGGGGTTGTCGGTCGCCCGCAAGCTCT GCCTGGATCTGAGCGAAATGGGCCTGCCCGTGGGGACCGAATTCCTCGATGCCTCGGTGCCGCAATACATCAGTGATCTG GTGAGCTGGGCCGCGATTGGCGCCCGCACCACCGAGAGCCAGATCCACCGCGAAATGGCTTCGGGCCTGAGCTGCCCGGT GGGCTTCAAGAACGGCACCCGCGGCAATGTGCAGATCGCCATTGACGCGGTGCGCTCGGCGGCCACACCGCATCATTTCA TGGCGCTGGCCCCCTCGGGTCTCGCGGCGATTGCGGCGACGGCCGGAAACCCGGATTGCCACATCATCCTGCGCGGCGGC GGTGGTACCAACTTTGATGCCGAGAGCGTGGATTCAGCCTGCAAAAAGGCCGAAGCCGATGGCATCCGTCCGCAGGTGAT GATCGACGCAAGCCACGCCAACTCTGCCAAGGATCCCGCCAAACAGCCCGAGGTGCTCTCGGATGTGGCCGGCCAGATGG CACAGGGTGAGACCCGCATCACCGGCATCATGATCGAAAGCCACCTCGAACAGGGTCGTCAGGATCTGCCCAAGGACGGG GACCTGTCGAAACTCACCTATGGTCAGTCGATCACCGACGGCTGCATCGGCTGGGAGCAAACCGAGGCCGAGCTGCGCAA ACTGGCCCAGGCGGTCAAAACACGCCGCACGCAGGGCGCCCGCCTGGCGGGTTGA
Upstream 100 bases:
>100_bases GACAGAAACAGCCGAATACCACACCAAACCGCCCCGGGACCGAGGGCGGTTTTTTGTTGCCCAGAGGTCCACGCGGGGCC CCCGCCCAAGGAACCGCCCG
Downstream 100 bases:
>100_bases GCTCGGATCAAAACGAAACGGGGCGGTGCACCGCCGCCCCCCTTCATCTTCTGACCAAAATATCCCGGGGTGAACTGACC GCAGGTCAGGAGGGGCAGCG
Product: phospho-2-dehydro-3-deoxyheptonate aldolase
Products: NA
Alternate protein names: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase; DAHP synthase; Phospho-2-keto-3-deoxyheptonate aldolase [H]
Number of amino acids: Translated: 364; Mature: 363
Protein sequence:
>364_residues MTTLSQTPTHDLRITDMQELICPEALAVKHPLTDAARETVLSARASIQKILHGADDRLVVVVGPCSIHDPEAALDYARRL APLRAELGDALEIVMRVYFEKPRTIAGWKGLINDPNLDGSFRINKGLSVARKLCLDLSEMGLPVGTEFLDASVPQYISDL VSWAAIGARTTESQIHREMASGLSCPVGFKNGTRGNVQIAIDAVRSAATPHHFMALAPSGLAAIAATAGNPDCHIILRGG GGTNFDAESVDSACKKAEADGIRPQVMIDASHANSAKDPAKQPEVLSDVAGQMAQGETRITGIMIESHLEQGRQDLPKDG DLSKLTYGQSITDGCIGWEQTEAELRKLAQAVKTRRTQGARLAG
Sequences:
>Translated_364_residues MTTLSQTPTHDLRITDMQELICPEALAVKHPLTDAARETVLSARASIQKILHGADDRLVVVVGPCSIHDPEAALDYARRL APLRAELGDALEIVMRVYFEKPRTIAGWKGLINDPNLDGSFRINKGLSVARKLCLDLSEMGLPVGTEFLDASVPQYISDL VSWAAIGARTTESQIHREMASGLSCPVGFKNGTRGNVQIAIDAVRSAATPHHFMALAPSGLAAIAATAGNPDCHIILRGG GGTNFDAESVDSACKKAEADGIRPQVMIDASHANSAKDPAKQPEVLSDVAGQMAQGETRITGIMIESHLEQGRQDLPKDG DLSKLTYGQSITDGCIGWEQTEAELRKLAQAVKTRRTQGARLAG >Mature_363_residues TTLSQTPTHDLRITDMQELICPEALAVKHPLTDAARETVLSARASIQKILHGADDRLVVVVGPCSIHDPEAALDYARRLA PLRAELGDALEIVMRVYFEKPRTIAGWKGLINDPNLDGSFRINKGLSVARKLCLDLSEMGLPVGTEFLDASVPQYISDLV SWAAIGARTTESQIHREMASGLSCPVGFKNGTRGNVQIAIDAVRSAATPHHFMALAPSGLAAIAATAGNPDCHIILRGGG GTNFDAESVDSACKKAEADGIRPQVMIDASHANSAKDPAKQPEVLSDVAGQMAQGETRITGIMIESHLEQGRQDLPKDGD LSKLTYGQSITDGCIGWEQTEAELRKLAQAVKTRRTQGARLAG
Specific function: Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) [H]
COG id: COG0722
COG function: function code E; 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I DAHP synthase family [H]
Homologues:
Organism=Escherichia coli, GI1786969, Length=346, Percent_Identity=59.2485549132948, Blast_Score=413, Evalue=1e-117, Organism=Escherichia coli, GI1788953, Length=354, Percent_Identity=52.2598870056497, Blast_Score=373, Evalue=1e-105, Organism=Escherichia coli, GI1787996, Length=347, Percent_Identity=51.5850144092219, Blast_Score=367, Evalue=1e-103, Organism=Saccharomyces cerevisiae, GI6320240, Length=352, Percent_Identity=51.1363636363636, Blast_Score=370, Evalue=1e-103, Organism=Saccharomyces cerevisiae, GI6319726, Length=357, Percent_Identity=53.5014005602241, Blast_Score=370, Evalue=1e-103,
Paralogues:
None
Copy number: 600 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR006218 - InterPro: IPR006219 [H]
Pfam domain/function: PF00793 DAHP_synth_1 [H]
EC number: =2.5.1.54 [H]
Molecular weight: Translated: 38884; Mature: 38752
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLSQTPTHDLRITDMQELICPEALAVKHPLTDAARETVLSARASIQKILHGADDRLVV CCCCCCCCCCCEEECCHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEE VVGPCSIHDPEAALDYARRLAPLRAELGDALEIVMRVYFEKPRTIAGWKGLINDPNLDGS EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCC FRINKGLSVARKLCLDLSEMGLPVGTEFLDASVPQYISDLVSWAAIGARTTESQIHREMA EEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH SGLSCPVGFKNGTRGNVQIAIDAVRSAATPHHFMALAPSGLAAIAATAGNPDCHIILRGG CCCCCCCCCCCCCCCCEEEEEEHHHHCCCCHHEEEECCCCCEEEEEECCCCCEEEEEECC GGTNFDAESVDSACKKAEADGIRPQVMIDASHANSAKDPAKQPEVLSDVAGQMAQGETRI CCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHH TGIMIESHLEQGRQDLPKDGDLSKLTYGQSITDGCIGWEQTEAELRKLAQAVKTRRTQGA HHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCC RLAG CCCC >Mature Secondary Structure TTLSQTPTHDLRITDMQELICPEALAVKHPLTDAARETVLSARASIQKILHGADDRLVV CCCCCCCCCCEEECCHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEE VVGPCSIHDPEAALDYARRLAPLRAELGDALEIVMRVYFEKPRTIAGWKGLINDPNLDGS EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCC FRINKGLSVARKLCLDLSEMGLPVGTEFLDASVPQYISDLVSWAAIGARTTESQIHREMA EEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH SGLSCPVGFKNGTRGNVQIAIDAVRSAATPHHFMALAPSGLAAIAATAGNPDCHIILRGG CCCCCCCCCCCCCCCCEEEEEEHHHHCCCCHHEEEECCCCCEEEEEECCCCCEEEEEECC GGTNFDAESVDSACKKAEADGIRPQVMIDASHANSAKDPAKQPEVLSDVAGQMAQGETRI CCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHH TGIMIESHLEQGRQDLPKDGDLSKLTYGQSITDGCIGWEQTEAELRKLAQAVKTRRTQGA HHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCC RLAG CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]