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The map label for this gene is yybR [H]

Identifier: 99080048

GI number: 99080048

Start: 225112

End: 225483

Strand: Reverse

Name: yybR [H]

Synonym: TM1040_0207

Alternate gene names: 99080048

Gene position: 225483-225112 (Counterclockwise)

Preceding gene: 99080053

Following gene: 99080042

Centisome position: 7.04

GC content: 59.95

Gene sequence:

>372_bases
ATGGATGCACGCGTCGAAGAGGACGGGACAGGCCGCCGTCAGGCCTATAACGTCTGCCTGGAACCCTGCGCGATCGAGCG
CGGGATGCGCATCATTGGTGGCAAATGGACGGGATCGATCCTGTGGCATCTGAAGGATGGCCCGGTGAGGTTCAACGATT
TGTCGCGTATGATCGGCGGTGCCTCCAAAAAGATGATCTCCGAACGGTTGCGCCAGCTCGAAACCCAGGGCCTGATCACC
CGCACTGTGATGGAGACGGCCCCCGTTTCAGTCCACTACGAGATCACGGAGCTCGGTCGCACGGCGCTTGGCTTTCTGGA
TGAGTTGCGCAAATGGAGCGAGAGCCTGCCAGAAGGGCTAACCACATCCTGA

Upstream 100 bases:

>100_bases
CGTCCCGCTCGGACCGAAATTGCGCATGGTGGAAACGATATTCAACCAGTATACTTTTTGTAACCTAGTACTCGCTGAGA
GATCGCTGAGGAGAATCGCA

Downstream 100 bases:

>100_bases
CCCTCTGCATCGCCCCGCCTGCGCCTGTGTCGATCCACGACGCGACGGCTGTCCCGGCGCACGCCAGAAAAAGAAAAGGC
GCACCCCTCAGGACGCGCCT

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MDARVEEDGTGRRQAYNVCLEPCAIERGMRIIGGKWTGSILWHLKDGPVRFNDLSRMIGGASKKMISERLRQLETQGLIT
RTVMETAPVSVHYEITELGRTALGFLDELRKWSESLPEGLTTS

Sequences:

>Translated_123_residues
MDARVEEDGTGRRQAYNVCLEPCAIERGMRIIGGKWTGSILWHLKDGPVRFNDLSRMIGGASKKMISERLRQLETQGLIT
RTVMETAPVSVHYEITELGRTALGFLDELRKWSESLPEGLTTS
>Mature_123_residues
MDARVEEDGTGRRQAYNVCLEPCAIERGMRIIGGKWTGSILWHLKDGPVRFNDLSRMIGGASKKMISERLRQLETQGLIT
RTVMETAPVSVHYEITELGRTALGFLDELRKWSESLPEGLTTS

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=107, Percent_Identity=34.5794392523364, Blast_Score=66, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13822; Mature: 13822

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDARVEEDGTGRRQAYNVCLEPCAIERGMRIIGGKWTGSILWHLKDGPVRFNDLSRMIGG
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEECCCCCCHHHHHHHHCC
ASKKMISERLRQLETQGLITRTVMETAPVSVHYEITELGRTALGFLDELRKWSESLPEGL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCC
TTS
CCC
>Mature Secondary Structure
MDARVEEDGTGRRQAYNVCLEPCAIERGMRIIGGKWTGSILWHLKDGPVRFNDLSRMIGG
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEECCCCCCHHHHHHHHCC
ASKKMISERLRQLETQGLITRTVMETAPVSVHYEITELGRTALGFLDELRKWSESLPEGL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCC
TTS
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]