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The map label for this gene is yrpE [H]

Identifier: 99080042

GI number: 99080042

Start: 220102

End: 220743

Strand: Reverse

Name: yrpE [H]

Synonym: TM1040_0201

Alternate gene names: 99080042

Gene position: 220743-220102 (Counterclockwise)

Preceding gene: 99080048

Following gene: 99080040

Centisome position: 6.9

GC content: 54.67

Gene sequence:

>642_bases
ATGAGACCGTTTTCTACTGGTGCGCTTGCCCTCGTGGCAGCAATGACGGTTGGTTTTTCGAGCCCCGGCGCTGCTGGAAA
CAAACACGATCACGCGCATACGCATGATGAAGAAGTCTACAAAGGGTACTTTGACGACAGCCAAATTCAGCCTCGGACGC
TCTCTGACTGGGAAGGAGACTGGCAGTCGATTTATCCGTTTCTCGTTGATGGCACGTTGGACCCCGTGCTGGCCCACAAA
GCGGAACACAGCGAGAAGACCGCCGAAGATTACCGCGCCTATTATGAAATCGGATACGCAACCGATGTGGACGCCATCAC
GATCCAAGGACAGACCGTTACATTCACCGCAAATGGCGCGAGTTATGGTGGCGAATATGTTTCGGACGGCTACGAGGTCC
TGACCTATAAGAAGGGCAACCGAGGTGTGCGCTACGTCTTTGCCAAAGAAAGCGGCGACGCGCTCGCCCCAGCCTTCATC
CAGTTCAGCGATCACCACATCGCTCCCAAGAAAGTGAGCCACTATCATCTCTACTGGGGAGATGATCGCGCCGAGGTGCT
GAAAGAGCTGACCAATTGGCCGACCTATTTCCCGGCAAGCTACAGTGGGGATGACATCGTGCACGACATGATCGCGCATT
AA

Upstream 100 bases:

>100_bases
GCGCAGCGCACGCGCTGCGCAATGGGAAGGGTGTGCCTTGCGGCGCGCAAGGAGTCCCACTAGTAACGTGTTATAACATA
ACGAATCAAGGTGAACGACA

Downstream 100 bases:

>100_bases
GTCTGCGCCCCCGCCCAAAGCGGCCCTCTCCGGGCTTACCTCACAAAAAAGCCCCGCAGGAATGAACCTGCGGGGCTTTC
CATTCTTTCAGAGGAGTGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MRPFSTGALALVAAMTVGFSSPGAAGNKHDHAHTHDEEVYKGYFDDSQIQPRTLSDWEGDWQSIYPFLVDGTLDPVLAHK
AEHSEKTAEDYRAYYEIGYATDVDAITIQGQTVTFTANGASYGGEYVSDGYEVLTYKKGNRGVRYVFAKESGDALAPAFI
QFSDHHIAPKKVSHYHLYWGDDRAEVLKELTNWPTYFPASYSGDDIVHDMIAH

Sequences:

>Translated_213_residues
MRPFSTGALALVAAMTVGFSSPGAAGNKHDHAHTHDEEVYKGYFDDSQIQPRTLSDWEGDWQSIYPFLVDGTLDPVLAHK
AEHSEKTAEDYRAYYEIGYATDVDAITIQGQTVTFTANGASYGGEYVSDGYEVLTYKKGNRGVRYVFAKESGDALAPAFI
QFSDHHIAPKKVSHYHLYWGDDRAEVLKELTNWPTYFPASYSGDDIVHDMIAH
>Mature_213_residues
MRPFSTGALALVAAMTVGFSSPGAAGNKHDHAHTHDEEVYKGYFDDSQIQPRTLSDWEGDWQSIYPFLVDGTLDPVLAHK
AEHSEKTAEDYRAYYEIGYATDVDAITIQGQTVTFTANGASYGGEYVSDGYEVLTYKKGNRGVRYVFAKESGDALAPAFI
QFSDHHIAPKKVSHYHLYWGDDRAEVLKELTNWPTYFPASYSGDDIVHDMIAH

Specific function: May Be Involved In Stress Response. [C]

COG id: COG3443

COG function: function code R; Predicted periplasmic or secreted protein

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the calycin superfamily. YodA family [H]

Homologues:

Organism=Escherichia coli, GI1788284, Length=207, Percent_Identity=43.4782608695652, Blast_Score=177, Evalue=4e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012674
- InterPro:   IPR011038
- InterPro:   IPR015304 [H]

Pfam domain/function: PF09223 YodA [H]

EC number: NA

Molecular weight: Translated: 23739; Mature: 23739

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPFSTGALALVAAMTVGFSSPGAAGNKHDHAHTHDEEVYKGYFDDSQIQPRTLSDWEGD
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
WQSIYPFLVDGTLDPVLAHKAEHSEKTAEDYRAYYEIGYATDVDAITIQGQTVTFTANGA
HHHCCCEEECCCCCHHHHHHHHCCHHHHHHHHHHHEECCCCCCCEEEECCCEEEEEECCC
SYGGEYVSDGYEVLTYKKGNRGVRYVFAKESGDALAPAFIQFSDHHIAPKKVSHYHLYWG
CCCCHHHCCCEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEEEC
DDRAEVLKELTNWPTYFPASYSGDDIVHDMIAH
CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MRPFSTGALALVAAMTVGFSSPGAAGNKHDHAHTHDEEVYKGYFDDSQIQPRTLSDWEGD
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
WQSIYPFLVDGTLDPVLAHKAEHSEKTAEDYRAYYEIGYATDVDAITIQGQTVTFTANGA
HHHCCCEEECCCCCHHHHHHHHCCHHHHHHHHHHHEECCCCCCCEEEECCCEEEEEECCC
SYGGEYVSDGYEVLTYKKGNRGVRYVFAKESGDALAPAFIQFSDHHIAPKKVSHYHLYWG
CCCCHHHCCCEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEEEC
DDRAEVLKELTNWPTYFPASYSGDDIVHDMIAH
CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]