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The map label for this gene is ydeL [H]

Identifier: 99079997

GI number: 99079997

Start: 171551

End: 173017

Strand: Reverse

Name: ydeL [H]

Synonym: TM1040_0156

Alternate gene names: 99079997

Gene position: 173017-171551 (Counterclockwise)

Preceding gene: 99080000

Following gene: 99079996

Centisome position: 5.41

GC content: 60.87

Gene sequence:

>1467_bases
ATGGCCATTTCCGTCGAAACGTTTTTTCTCAATACCGATGCGCAGGGCACGTTACAGGCCCAGATCCAGGAGATGATTGC
CGCTGGCATTCTCTCGGGGCGGTTTCGCGCGGGTGAAAAACTGCCCTCATCACGCAAATTGGCGCAGCATCTCGGGGTGA
GCCGCATCACCGTGACGCTGGCCTATACGGAACTTGTGGCAAATGACTATCTGAGCGCTCGCGGACGGTCGGGATATTTC
GTCTCCCAGACCGCGCCGGTGCCGCCCTCTTTCTCGCCTATTCAAAAAGAAGCGGACAGCGTCGATTGGAACCGCGCCAT
CACTCAGGATTTCACCGGCGGCGACAGCCCCCCCAAACCGCGTGACTGGCGCAACTATCGCTATCCCTTCATCTACGGGC
AGGCGGATGCCACCCTGTTTGATCACGCCAACTGGCGCCTCTGCGCGCTCCGGGCGCTCGGGCAAAAGGACTTTGCTGCG
ATGACCGGCGATTACTTTGATCAGGATGACCCGCTCTTGATCGAATATATCGCCCGCAACACGCTGCCGCGCCGAGGGGT
GATTGCCCGGCCCGAGGAAATCCTGATCACGCTGGGTGCACAAAACGCGCTCTGGACCGTGGTGCAGCTGTTGTTGCAGC
CCGGCCGCAAGGCCGCCATTGAAGACCCGAGCTATTACACGCTGCGTGACCAACTCAGTCATACAGGCTGCGATCTGGAT
GTGATCGCGGTGGATGAGGACGGGTTGCCGCCAGCACAGATCGCAACCAACACCGATGTGATTTTCACCACTCCGAGCCA
TCAGAGTCCGACCACCGCGACAATGCCAATGGCGCGCCGCAAGGCGCTGTTGTCGCGCGCCACTGAAATCGGTGCGGTGG
TAGTGGAGGACGACTATGAATTCGAGATGTCCTTTCGCAATCAGCCCTCGCCTGCGCTCAAATCCATCGACCGCGATGGG
CGGGTGATCTATCTGGGCAGCTTCTCCAAATCGCTCTTTCCGGGGTTGCGGTTGGGGTATCTGGTGGGGTCGGAGCCCTT
CATCCGACAGGCGCGCGCACTCAGGGCCAATGTCTTGCGCCATCCGCCGGGCCATGTGCAGCGCACCGTTGCCTATTTCC
TGTCTCTTGGTCACTACGACGCGCAAATCCGGCGCACCGCCAAAGTCCTGCAAGAGCGCCGCGCCGTACTGGAGCGCGCG
GTCGAGGCCGAAGGATTGTGCCCCGCCAATCGCAGCCTATACGGGGGATCCTCTCTCTGGATGCAGGCCCCTGATCAGGT
CAACATGGGGCAGGTGGGCCTGAAGCTGCGCGAAAAAGGTGTGTTGATCGAACCCGGCGCGCCCTTTTTTGCGCGAGACA
CTCGGCGGCACAACTTCTACCGGCTCGGATATTCGTCGATCGCCTCAGAGCGCATCCCGCAAGGCATCGCACATGTGGCC
GAGGCGATCCGGGATAGCCAGTCCTGA

Upstream 100 bases:

>100_bases
TTAATATCGATCCCGCAAGTCCAAATTCCAAACCCTGCATAATCAAACCCATCAAACAGTCCAGATTGCCCCGGCCCTAA
GTCCAGACTAGGGTCGCGGC

Downstream 100 bases:

>100_bases
TGCGCGAGCCATACAAGGTGGTCCGACTAGCATCTACCGCTTCTGGCACTACCGCACCATACAACTGGCCCTAACCCCTT
CGCGCAAGCCTGCATAAACC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 487

Protein sequence:

>488_residues
MAISVETFFLNTDAQGTLQAQIQEMIAAGILSGRFRAGEKLPSSRKLAQHLGVSRITVTLAYTELVANDYLSARGRSGYF
VSQTAPVPPSFSPIQKEADSVDWNRAITQDFTGGDSPPKPRDWRNYRYPFIYGQADATLFDHANWRLCALRALGQKDFAA
MTGDYFDQDDPLLIEYIARNTLPRRGVIARPEEILITLGAQNALWTVVQLLLQPGRKAAIEDPSYYTLRDQLSHTGCDLD
VIAVDEDGLPPAQIATNTDVIFTTPSHQSPTTATMPMARRKALLSRATEIGAVVVEDDYEFEMSFRNQPSPALKSIDRDG
RVIYLGSFSKSLFPGLRLGYLVGSEPFIRQARALRANVLRHPPGHVQRTVAYFLSLGHYDAQIRRTAKVLQERRAVLERA
VEAEGLCPANRSLYGGSSLWMQAPDQVNMGQVGLKLREKGVLIEPGAPFFARDTRRHNFYRLGYSSIASERIPQGIAHVA
EAIRDSQS

Sequences:

>Translated_488_residues
MAISVETFFLNTDAQGTLQAQIQEMIAAGILSGRFRAGEKLPSSRKLAQHLGVSRITVTLAYTELVANDYLSARGRSGYF
VSQTAPVPPSFSPIQKEADSVDWNRAITQDFTGGDSPPKPRDWRNYRYPFIYGQADATLFDHANWRLCALRALGQKDFAA
MTGDYFDQDDPLLIEYIARNTLPRRGVIARPEEILITLGAQNALWTVVQLLLQPGRKAAIEDPSYYTLRDQLSHTGCDLD
VIAVDEDGLPPAQIATNTDVIFTTPSHQSPTTATMPMARRKALLSRATEIGAVVVEDDYEFEMSFRNQPSPALKSIDRDG
RVIYLGSFSKSLFPGLRLGYLVGSEPFIRQARALRANVLRHPPGHVQRTVAYFLSLGHYDAQIRRTAKVLQERRAVLERA
VEAEGLCPANRSLYGGSSLWMQAPDQVNMGQVGLKLREKGVLIEPGAPFFARDTRRHNFYRLGYSSIASERIPQGIAHVA
EAIRDSQS
>Mature_487_residues
AISVETFFLNTDAQGTLQAQIQEMIAAGILSGRFRAGEKLPSSRKLAQHLGVSRITVTLAYTELVANDYLSARGRSGYFV
SQTAPVPPSFSPIQKEADSVDWNRAITQDFTGGDSPPKPRDWRNYRYPFIYGQADATLFDHANWRLCALRALGQKDFAAM
TGDYFDQDDPLLIEYIARNTLPRRGVIARPEEILITLGAQNALWTVVQLLLQPGRKAAIEDPSYYTLRDQLSHTGCDLDV
IAVDEDGLPPAQIATNTDVIFTTPSHQSPTTATMPMARRKALLSRATEIGAVVVEDDYEFEMSFRNQPSPALKSIDRDGR
VIYLGSFSKSLFPGLRLGYLVGSEPFIRQARALRANVLRHPPGHVQRTVAYFLSLGHYDAQIRRTAKVLQERRAVLERAV
EAEGLCPANRSLYGGSSLWMQAPDQVNMGQVGLKLREKGVLIEPGAPFFARDTRRHNFYRLGYSSIASERIPQGIAHVAE
AIRDSQS

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=321, Percent_Identity=25.2336448598131, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI33469970, Length=321, Percent_Identity=25.2336448598131, Blast_Score=103, Evalue=3e-22,
Organism=Escherichia coli, GI1790797, Length=469, Percent_Identity=28.7846481876333, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI1787710, Length=485, Percent_Identity=27.4226804123711, Blast_Score=129, Evalue=3e-31,
Organism=Saccharomyces cerevisiae, GI6321236, Length=392, Percent_Identity=21.6836734693878, Blast_Score=70, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 54230; Mature: 54099

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAISVETFFLNTDAQGTLQAQIQEMIAAGILSGRFRAGEKLPSSRKLAQHLGVSRITVTL
CEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEEEEEE
AYTELVANDYLSARGRSGYFVSQTAPVPPSFSPIQKEADSVDWNRAITQDFTGGDSPPKP
HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHCCCCHHHHHHCCCCCCCCCCCC
RDWRNYRYPFIYGQADATLFDHANWRLCALRALGQKDFAAMTGDYFDQDDPLLIEYIARN
CCCCCCCCCEEECCCCCEEEECCCCEEEHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHC
TLPRRGVIARPEEILITLGAQNALWTVVQLLLQPGRKAAIEDPSYYTLRDQLSHTGCDLD
CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHCCCCCEE
VIAVDEDGLPPAQIATNTDVIFTTPSHQSPTTATMPMARRKALLSRATEIGAVVVEDDYE
EEEECCCCCCCHHEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCE
FEMSFRNQPSPALKSIDRDGRVIYLGSFSKSLFPGLRLGYLVGSEPFIRQARALRANVLR
EEEECCCCCCHHHHHCCCCCCEEEEECCCHHHCCCCEEEHEECCCHHHHHHHHHHHHHHC
HPPGHVQRTVAYFLSLGHYDAQIRRTAKVLQERRAVLERAVEAEGLCPANRSLYGGSSLW
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
MQAPDQVNMGQVGLKLREKGVLIEPGAPFFARDTRRHNFYRLGYSSIASERIPQGIAHVA
EECCCCCCCCHHCCEECCCCEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHH
EAIRDSQS
HHHHCCCC
>Mature Secondary Structure 
AISVETFFLNTDAQGTLQAQIQEMIAAGILSGRFRAGEKLPSSRKLAQHLGVSRITVTL
EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEEEEEE
AYTELVANDYLSARGRSGYFVSQTAPVPPSFSPIQKEADSVDWNRAITQDFTGGDSPPKP
HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHCCCCHHHHHHCCCCCCCCCCCC
RDWRNYRYPFIYGQADATLFDHANWRLCALRALGQKDFAAMTGDYFDQDDPLLIEYIARN
CCCCCCCCCEEECCCCCEEEECCCCEEEHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHC
TLPRRGVIARPEEILITLGAQNALWTVVQLLLQPGRKAAIEDPSYYTLRDQLSHTGCDLD
CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHCCCCCEE
VIAVDEDGLPPAQIATNTDVIFTTPSHQSPTTATMPMARRKALLSRATEIGAVVVEDDYE
EEEECCCCCCCHHEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCE
FEMSFRNQPSPALKSIDRDGRVIYLGSFSKSLFPGLRLGYLVGSEPFIRQARALRANVLR
EEEECCCCCCHHHHHCCCCCCEEEEECCCHHHCCCCEEEHEECCCHHHHHHHHHHHHHHC
HPPGHVQRTVAYFLSLGHYDAQIRRTAKVLQERRAVLERAVEAEGLCPANRSLYGGSSLW
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
MQAPDQVNMGQVGLKLREKGVLIEPGAPFFARDTRRHNFYRLGYSSIASERIPQGIAHVA
EECCCCCCCCHHCCEECCCCEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHH
EAIRDSQS
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]