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The map label for this gene is ydaM [H]

Identifier: 104779483

GI number: 104779483

Start: 202978

End: 203967

Strand: Reverse

Name: ydaM [H]

Synonym: PSEEN0195

Alternate gene names: 104779483

Gene position: 203967-202978 (Counterclockwise)

Preceding gene: 104779484

Following gene: 104779477

Centisome position: 3.46

GC content: 64.65

Gene sequence:

>990_bases
ATGGCCAAAGAACTCCCACCCACGCACACCGGCGCCCCCCGCCCCGAAGCCGCCCAGACCCTGCTGGCCCTGCTCCACGC
ACAGGGCGAAGTGGCGCGTCTGAGCGAACGTGAGCAGCTGTACAGCTCCCTGCTCGACAGCGTCAACGCGGTGCTGTGGG
CGTTCGACTGGGAGACGCGCCAGGTGCTCTACGTCAGCCCCGCCTACGAGCGCATTTTTGGTCGCCCGGCCAGCCTGGTG
CTTGCCGACTACAACGAGTGGCGCGACGCGATCTACCCGGACGACCTCGAGTACGCCGAGCGCAGCCTGGCCCAGGTGCT
GGTCAAGGGCACCGTGGAAGACCGCGAGTACCGCATCCTCAATGCCGCAGGTGAAGTGCGCTGGATCAGTGACAAGTGCT
ACATCAACCAACAGCGCGAGGGTGACCAGCGAGTGATCATCGTGGGCATCGCCGAGGACATCACCGAGAAGAAGCGGCTG
GAAGGCGAGCTGCAACGCCTGGCCACCACTGATGTATTGACCCAGAGCAGCAACCGCCGGCACTTCTTCGACTGCGCCCA
ACAAGCCTTCGACAGCGCCCGCGAGGACGGCACGCCGCTAGCCTTCCTGTTACTGGATATCGACGACTTCAAGCAGATCA
ACGACAGCTACGGCCACCAGGAAGGCGACCAGGTGCTGCAACGCATCGCCGACGCTGGCAAGGCCGTGCTGCGGCGTGGC
GACCAGTTCGGGCGCATTGGTGGTGAAGAGTTCGCGGCGGTGTTCCCCGGCTGCACGGCACAGATGGCCGAGCAGATCGC
CGAGCGCCTGCAGCGGGAGATCCAGCGCCTGAGTTTCAGCCATGAGCAGCAGACCTACGGCGTGACCGTGAGCCAAGGCC
TGACCGGGCTTACCGATGAGGACGAGAAGCTGGACAGCCTGTTCGCTCGAGCGGATGCAGCCATGTATCGGGCCAAGCGC
CAGGGCAAGAACCAGATCGTGAAAGGCTGA

Upstream 100 bases:

>100_bases
CCGGAACTTACCCTTCGCACACCGCTCAAACTCGACATATCGCCCGCGTGGCGGGCCTGACCGTGGCCGCACGCCTATCG
TCGAGAACCGCTCCGTGCTC

Downstream 100 bases:

>100_bases
GCGGATTACCCACGGTTCACGCGCCGCAAGCAGCTCGGTTCACTTCGATGCGGTGGTACTCCACTCATAGTCGATCGGAC
CGCTACGTGGCCCGGCCAGT

Product: sensory box protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MAKELPPTHTGAPRPEAAQTLLALLHAQGEVARLSEREQLYSSLLDSVNAVLWAFDWETRQVLYVSPAYERIFGRPASLV
LADYNEWRDAIYPDDLEYAERSLAQVLVKGTVEDREYRILNAAGEVRWISDKCYINQQREGDQRVIIVGIAEDITEKKRL
EGELQRLATTDVLTQSSNRRHFFDCAQQAFDSAREDGTPLAFLLLDIDDFKQINDSYGHQEGDQVLQRIADAGKAVLRRG
DQFGRIGGEEFAAVFPGCTAQMAEQIAERLQREIQRLSFSHEQQTYGVTVSQGLTGLTDEDEKLDSLFARADAAMYRAKR
QGKNQIVKG

Sequences:

>Translated_329_residues
MAKELPPTHTGAPRPEAAQTLLALLHAQGEVARLSEREQLYSSLLDSVNAVLWAFDWETRQVLYVSPAYERIFGRPASLV
LADYNEWRDAIYPDDLEYAERSLAQVLVKGTVEDREYRILNAAGEVRWISDKCYINQQREGDQRVIIVGIAEDITEKKRL
EGELQRLATTDVLTQSSNRRHFFDCAQQAFDSAREDGTPLAFLLLDIDDFKQINDSYGHQEGDQVLQRIADAGKAVLRRG
DQFGRIGGEEFAAVFPGCTAQMAEQIAERLQREIQRLSFSHEQQTYGVTVSQGLTGLTDEDEKLDSLFARADAAMYRAKR
QGKNQIVKG
>Mature_328_residues
AKELPPTHTGAPRPEAAQTLLALLHAQGEVARLSEREQLYSSLLDSVNAVLWAFDWETRQVLYVSPAYERIFGRPASLVL
ADYNEWRDAIYPDDLEYAERSLAQVLVKGTVEDREYRILNAAGEVRWISDKCYINQQREGDQRVIIVGIAEDITEKKRLE
GELQRLATTDVLTQSSNRRHFFDCAQQAFDSAREDGTPLAFLLLDIDDFKQINDSYGHQEGDQVLQRIADAGKAVLRRGD
QFGRIGGEEFAAVFPGCTAQMAEQIAERLQREIQRLSFSHEQQTYGVTVSQGLTGLTDEDEKLDSLFARADAAMYRAKRQ
GKNQIVKG

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=187, Percent_Identity=36.3636363636364, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1788381, Length=179, Percent_Identity=29.608938547486, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=31.5151515151515, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=32, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=32.5443786982249, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788085, Length=201, Percent_Identity=30.3482587064677, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI145693134, Length=179, Percent_Identity=30.1675977653631, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1787541, Length=186, Percent_Identity=30.1075268817204, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1787802, Length=160, Percent_Identity=32.5, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87081974, Length=166, Percent_Identity=30.1204819277108, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=32.7160493827161, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081977, Length=152, Percent_Identity=30.9210526315789, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788956, Length=177, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 37145; Mature: 37014

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKELPPTHTGAPRPEAAQTLLALLHAQGEVARLSEREQLYSSLLDSVNAVLWAFDWETR
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC
QVLYVSPAYERIFGRPASLVLADYNEWRDAIYPDDLEYAERSLAQVLVKGTVEDREYRIL
EEEEECHHHHHHHCCCHHEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE
NAAGEVRWISDKCYINQQREGDQRVIIVGIAEDITEKKRLEGELQRLATTDVLTQSSNRR
ECCCCEEEECCHHEECCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
HFFDCAQQAFDSAREDGTPLAFLLLDIDDFKQINDSYGHQEGDQVLQRIADAGKAVLRRG
HHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
DQFGRIGGEEFAAVFPGCTAQMAEQIAERLQREIQRLSFSHEQQTYGVTVSQGLTGLTDE
CHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEHHCCCCCCCCC
DEKLDSLFARADAAMYRAKRQGKNQIVKG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AKELPPTHTGAPRPEAAQTLLALLHAQGEVARLSEREQLYSSLLDSVNAVLWAFDWETR
CCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC
QVLYVSPAYERIFGRPASLVLADYNEWRDAIYPDDLEYAERSLAQVLVKGTVEDREYRIL
EEEEECHHHHHHHCCCHHEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE
NAAGEVRWISDKCYINQQREGDQRVIIVGIAEDITEKKRLEGELQRLATTDVLTQSSNRR
ECCCCEEEECCHHEECCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
HFFDCAQQAFDSAREDGTPLAFLLLDIDDFKQINDSYGHQEGDQVLQRIADAGKAVLRRG
HHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
DQFGRIGGEEFAAVFPGCTAQMAEQIAERLQREIQRLSFSHEQQTYGVTVSQGLTGLTDE
CHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEHHCCCCCCCCC
DEKLDSLFARADAAMYRAKRQGKNQIVKG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]