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The map label for this gene is sdsB [H]

Identifier: 104779477

GI number: 104779477

Start: 192181

End: 192900

Strand: Reverse

Name: sdsB [H]

Synonym: PSEEN0184

Alternate gene names: 104779477

Gene position: 192900-192181 (Counterclockwise)

Preceding gene: 104779483

Following gene: 104779474

Centisome position: 3.28

GC content: 65.56

Gene sequence:

>720_bases
GTGCTGGAGCATGCGCGGCGGCTGGTGCACGGGGCGCATAACCTGGCCAACGAGATCAACCAGTTCAATGGCGCGACCAC
GGGCGTGGTGCGCTTCGGTTCGGGGCCGGCACCGGCAGGCGGGTTGGTACCCCGTGCGGTGGCGCGATTCGTTGCCGAGT
ACCCGGCGGCGCGCACTTGCTTCCAGGTGGATAACTGGCAGGCGCTGAACCGGCGATTGATTGCCGAGGAAATCGAGTTC
TTCGTGGCCGACACCCGCCAGTTCGAGGCCGACCCGGATTACCAGGTGCTCAAATTCAAGCCACAACGCTGGCACTTCTG
CTGCCGCCAGGGGCATCCGCTGACCGAACGGGCCGAAGTGCGGGCGCGGGACCTGTTCGACTACCCGCTGGCCACCACGT
TTCGCCCGCCGAACATCCGCAAGATCCTCAGCGACCTCAGCGGGCGGCAGGACTTTCTGCCCAGCGTGGAATGCGAGCAT
GGCTATGCCCTGCTCAATGTGGTGCTGCACTCGGACACCATCGGCATCGCTTGCAGCGCGAACCTGCGGCCGTATCAGGG
GGAGCGGGGGTTGGTGGCGCTAGAGTTGGCGGACTTGGCGCCGGAGCAGGAAGAGGCGTTCTACACGCGCTATGGCGTGG
TGAGCCGGGTGGGGTATGGGTTGTCGGCATTGGCGCAGGGGTTGGTCAGGCAGCTGGTGGCCTGTGATACCGAGTTGTGA

Upstream 100 bases:

>100_bases
GGCCTTCAGCCGCAGCATCCAGACGCTGGAACACAACGTCGGCTGCCGCCTGGTCGACCGCGCCAGCAAGGAGCTGGCGC
CGACCCGCCAGGGGCTGCTG

Downstream 100 bases:

>100_bases
CGGGTTCGCCGGCAAGCCGGCTCCTACGGGATGGTCGTAGGAGCCGGCTTGCCGGCGAACCTAGGTCAGCCTTTACGCGT
GGTCCGGCTCACTTGCCCAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MLEHARRLVHGAHNLANEINQFNGATTGVVRFGSGPAPAGGLVPRAVARFVAEYPAARTCFQVDNWQALNRRLIAEEIEF
FVADTRQFEADPDYQVLKFKPQRWHFCCRQGHPLTERAEVRARDLFDYPLATTFRPPNIRKILSDLSGRQDFLPSVECEH
GYALLNVVLHSDTIGIACSANLRPYQGERGLVALELADLAPEQEEAFYTRYGVVSRVGYGLSALAQGLVRQLVACDTEL

Sequences:

>Translated_239_residues
MLEHARRLVHGAHNLANEINQFNGATTGVVRFGSGPAPAGGLVPRAVARFVAEYPAARTCFQVDNWQALNRRLIAEEIEF
FVADTRQFEADPDYQVLKFKPQRWHFCCRQGHPLTERAEVRARDLFDYPLATTFRPPNIRKILSDLSGRQDFLPSVECEH
GYALLNVVLHSDTIGIACSANLRPYQGERGLVALELADLAPEQEEAFYTRYGVVSRVGYGLSALAQGLVRQLVACDTEL
>Mature_239_residues
MLEHARRLVHGAHNLANEINQFNGATTGVVRFGSGPAPAGGLVPRAVARFVAEYPAARTCFQVDNWQALNRRLIAEEIEF
FVADTRQFEADPDYQVLKFKPQRWHFCCRQGHPLTERAEVRARDLFDYPLATTFRPPNIRKILSDLSGRQDFLPSVECEH
GYALLNVVLHSDTIGIACSANLRPYQGERGLVALELADLAPEQEEAFYTRYGVVSRVGYGLSALAQGLVRQLVACDTEL

Specific function: Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 26714; Mature: 26714

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEHARRLVHGAHNLANEINQFNGATTGVVRFGSGPAPAGGLVPRAVARFVAEYPAARTC
CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCHHHE
FQVDNWQALNRRLIAEEIEFFVADTRQFEADPDYQVLKFKPQRWHFCCRQGHPLTERAEV
EECCCHHHHHHHHHHHHHHHHHHHCHHCCCCCCCEEEEECCHHHHHHHHCCCCCCHHHHH
RARDLFDYPLATTFRPPNIRKILSDLSGRQDFLPSVECEHGYALLNVVLHSDTIGIACSA
HHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHCCCEEEEEEC
NLRPYQGERGLVALELADLAPEQEEAFYTRYGVVSRVGYGLSALAQGLVRQLVACDTEL
CCCCCCCCCCEEEEEHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLEHARRLVHGAHNLANEINQFNGATTGVVRFGSGPAPAGGLVPRAVARFVAEYPAARTC
CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCHHHE
FQVDNWQALNRRLIAEEIEFFVADTRQFEADPDYQVLKFKPQRWHFCCRQGHPLTERAEV
EECCCHHHHHHHHHHHHHHHHHHHCHHCCCCCCCEEEEECCHHHHHHHHCCCCCCHHHHH
RARDLFDYPLATTFRPPNIRKILSDLSGRQDFLPSVECEHGYALLNVVLHSDTIGIACSA
HHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHCCCEEEEEEC
NLRPYQGERGLVALELADLAPEQEEAFYTRYGVVSRVGYGLSALAQGLVRQLVACDTEL
CCCCCCCCCCEEEEEHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587481 [H]