Click here to switch to the map view.

The map label for this gene is 104779484

Identifier: 104779484

GI number: 104779484

Start: 204107

End: 205291

Strand: Reverse

Name: 104779484

Synonym: PSEEN0196

Alternate gene names: NA

Gene position: 205291-204107 (Counterclockwise)

Preceding gene: 104779486

Following gene: 104779483

Centisome position: 3.49

GC content: 64.47

Gene sequence:

>1185_bases
ATGTGGTACTACGGTCTGCTCGACTTGTCGGCCTGGCAACTGGTCGCGGTCACCTTGCTGATGACTCACCTGACCATTGT
CAGCGTCACCATCTACCTGCACCGCTACTCGGCCCACCGGGCCCTGGAGCTGAACGCGGGCCTCAAGCATTTCTTCCGTT
TCTGGCTGTGGCTCACCACCGCGCAGAACACCCGCGAGTGGACCGCCATCCACCGCAAGCACCACGCCAAGTGCGAAACC
CCGGACGACCCGCACAGCCCCGTGCACAAGGGCCTGGGCACCGTGCTGCGCAAGGGCGCGGAGCTGTACCGCGAAGAGGC
ACGCAACGAAGAGACGCTGCGCATCTACGGCAAGAACTGCCCCGATGACTGGATCGAGCGCAACCTCTACACCCGCTACA
AGCTCGGCGGCATCGCCCTGATGGCAGTCATCGACCTGCTGCTGTTCGGCACCATCGGCATCACCATCTGGGCTATCCAG
ATGATGTGGATTCCGTTCTGGGCCGCTGGCGTGGTCAACGGCCTGGGCCACGCGGTGGGCTATCGCAACTTCGAATGCCG
CGACGCCGCCACCAACCTGGTGCCCTGGGGCATCATCATTGGTGGCGAAGAGCTGCACAACAACCACCACACCTACCCCA
ACTCGGCGAAGCTCTCGGTGCGCCGCTGGGAATTCGACATGGGCTGGATGTGGATCCGCCTGCTGAGCCTGCTGCGCCTG
GCCAAGGTGCAACGGGTCGCGCCCATCGCCCACCGGGTCGAGGGCAAGGCCTCGCTGGACATGGACACCGCCATGGCCAT
CCTCAACAACCGCTTCCAGATCATGGCCCAGTACCGCAAGCTGGTGATCGCGCCGCTGGTGAAGCAGGAGCTGGACAAGG
TCGACGCGTCGGTACGCCACCGCTTCCGCCGCGCCAAACGCCTGCTCTCGCGCGAAACCAGCCTGCTGCAGGACCGCCAT
CACGTGCGTATCGAATCGATGCTCGCCCACAGCCAGGCCCTCAAGACCATCTACGAAAAGCGCCTGGCACTGCAGCAGAT
CTGGGCGCGTACCAGCGCCAACGGCCACGACATGCTCGCCGCCATGAAAGAATGGGTGCACGAGGCGGAAGCCAGCGGCA
TTCATTCGCTGCGCGACTTCGCCGCCCAGCTCAAAACCTACTCGCTGCGCCCCGCCACGGCCTGA

Upstream 100 bases:

>100_bases
ACCCTGTGACTTCCTATCAAAAAGGGCGACTGGTTTTATTTCCCCGCCAAGGGATAATGCGAGCGCTGTTCCCCCTGTGT
TTTCGAGGGTCTTCCCCGTT

Downstream 100 bases:

>100_bases
CCGCCGTTGATCGGCACGTTCCGCAATGGAACGTGCCGACCGGAACTTACCCTTCGCACACCGCTCAAACTCGACATATC
GCCCGCGTGGCGGGCCTGAC

Product: fatty acid desaturase

Products: NA

Alternate protein names: Stearoyl-CoA 9-Desaturase; Fatty-Acid Desaturase; Delta-9 Acyl-Phospholipid Desaturase; Delta-9 Desaturase; Fatty Acid Desaturase Family Protein; Fatty Acid Desaturase Subfamily; Stearoyl-CoA Desaturase; Acyl-CoA Desaturase; Delta 9 Acyl-Lipid Fatty Acid Desaturase; Delta-9 Acyl-Lipid Desaturase; Stearoyl-CoA Desaturase Oxidoreductase; Fatty-Acid Desaturase Transmenbrane Protein; Delta-9 Fatty Ac Id Desaturase; Transmembrane Fatty Acid Desaturase; Syn-2 Delta 9 Acyl-Lipid Fatty Acid Desaturase; Desaturase-Like; Stearoyl-CoA-9-Desaturase; Delta 9 Acyl-Lipid Desaturase; Stearoyl-CoA Desaturase Oxidoreductase Protein; Fatty Acid Desaturase Family

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MWYYGLLDLSAWQLVAVTLLMTHLTIVSVTIYLHRYSAHRALELNAGLKHFFRFWLWLTTAQNTREWTAIHRKHHAKCET
PDDPHSPVHKGLGTVLRKGAELYREEARNEETLRIYGKNCPDDWIERNLYTRYKLGGIALMAVIDLLLFGTIGITIWAIQ
MMWIPFWAAGVVNGLGHAVGYRNFECRDAATNLVPWGIIIGGEELHNNHHTYPNSAKLSVRRWEFDMGWMWIRLLSLLRL
AKVQRVAPIAHRVEGKASLDMDTAMAILNNRFQIMAQYRKLVIAPLVKQELDKVDASVRHRFRRAKRLLSRETSLLQDRH
HVRIESMLAHSQALKTIYEKRLALQQIWARTSANGHDMLAAMKEWVHEAEASGIHSLRDFAAQLKTYSLRPATA

Sequences:

>Translated_394_residues
MWYYGLLDLSAWQLVAVTLLMTHLTIVSVTIYLHRYSAHRALELNAGLKHFFRFWLWLTTAQNTREWTAIHRKHHAKCET
PDDPHSPVHKGLGTVLRKGAELYREEARNEETLRIYGKNCPDDWIERNLYTRYKLGGIALMAVIDLLLFGTIGITIWAIQ
MMWIPFWAAGVVNGLGHAVGYRNFECRDAATNLVPWGIIIGGEELHNNHHTYPNSAKLSVRRWEFDMGWMWIRLLSLLRL
AKVQRVAPIAHRVEGKASLDMDTAMAILNNRFQIMAQYRKLVIAPLVKQELDKVDASVRHRFRRAKRLLSRETSLLQDRH
HVRIESMLAHSQALKTIYEKRLALQQIWARTSANGHDMLAAMKEWVHEAEASGIHSLRDFAAQLKTYSLRPATA
>Mature_394_residues
MWYYGLLDLSAWQLVAVTLLMTHLTIVSVTIYLHRYSAHRALELNAGLKHFFRFWLWLTTAQNTREWTAIHRKHHAKCET
PDDPHSPVHKGLGTVLRKGAELYREEARNEETLRIYGKNCPDDWIERNLYTRYKLGGIALMAVIDLLLFGTIGITIWAIQ
MMWIPFWAAGVVNGLGHAVGYRNFECRDAATNLVPWGIIIGGEELHNNHHTYPNSAKLSVRRWEFDMGWMWIRLLSLLRL
AKVQRVAPIAHRVEGKASLDMDTAMAILNNRFQIMAQYRKLVIAPLVKQELDKVDASVRHRFRRAKRLLSRETSLLQDRH
HVRIESMLAHSQALKTIYEKRLALQQIWARTSANGHDMLAAMKEWVHEAEASGIHSLRDFAAQLKTYSLRPATA

Specific function: Unknown

COG id: COG1398

COG function: function code I; Fatty-acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45536; Mature: 45536

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWYYGLLDLSAWQLVAVTLLMTHLTIVSVTIYLHRYSAHRALELNAGLKHFFRFWLWLTT
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHC
AQNTREWTAIHRKHHAKCETPDDPHSPVHKGLGTVLRKGAELYREEARNEETLRIYGKNC
CCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PDDWIERNLYTRYKLGGIALMAVIDLLLFGTIGITIWAIQMMWIPFWAAGVVNGLGHAVG
CHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
YRNFECRDAATNLVPWGIIIGGEELHNNHHTYPNSAKLSVRRWEFDMGWMWIRLLSLLRL
CCCCCHHHHHCCCCCCEEEECCHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHH
AKVQRVAPIAHRVEGKASLDMDTAMAILNNRFQIMAQYRKLVIAPLVKQELDKVDASVRH
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFRRAKRLLSRETSLLQDRHHVRIESMLAHSQALKTIYEKRLALQQIWARTSANGHDMLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AMKEWVHEAEASGIHSLRDFAAQLKTYSLRPATA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MWYYGLLDLSAWQLVAVTLLMTHLTIVSVTIYLHRYSAHRALELNAGLKHFFRFWLWLTT
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHC
AQNTREWTAIHRKHHAKCETPDDPHSPVHKGLGTVLRKGAELYREEARNEETLRIYGKNC
CCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PDDWIERNLYTRYKLGGIALMAVIDLLLFGTIGITIWAIQMMWIPFWAAGVVNGLGHAVG
CHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
YRNFECRDAATNLVPWGIIIGGEELHNNHHTYPNSAKLSVRRWEFDMGWMWIRLLSLLRL
CCCCCHHHHHCCCCCCEEEECCHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHH
AKVQRVAPIAHRVEGKASLDMDTAMAILNNRFQIMAQYRKLVIAPLVKQELDKVDASVRH
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFRRAKRLLSRETSLLQDRHHVRIESMLAHSQALKTIYEKRLALQQIWARTSANGHDMLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AMKEWVHEAEASGIHSLRDFAAQLKTYSLRPATA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA