Click here to switch to the map view.

The map label for this gene is ddrA [H]

Identifier: 94985082

GI number: 94985082

Start: 1048268

End: 1048873

Strand: Reverse

Name: ddrA [H]

Synonym: Dgeo_0977

Alternate gene names: 94985082

Gene position: 1048873-1048268 (Counterclockwise)

Preceding gene: 94985083

Following gene: 94985074

Centisome position: 42.51

GC content: 66.67

Gene sequence:

>606_bases
ATGAAGTTGAGCGATGTTCAGAAACGACTCCAGGCCCCGTTTCCCGCTCACCTCGTGGGCTGGAAGGCCCAGGCCTTCAA
CAAGGAACGCACCCGCGCCCTGCTGCTGGCCTATGTCGATGCCCGCGCCGTCCAGGATCGCCTCGATGCCATCTGCCCGG
ATAGCTGGAGCTTCGAGCTGGAAGTGATTCCCGGCACAGCCACGCCAACCGTCAAGGGCCGCCTGACTGTGCTGGGCGTG
ACCCGTGAGGACATTGGCGAGGCGGGTGAAGGCGAGTACAGCACCCTCAAGGCCGCCGCCTCCGACGCACTCAAGCGCTG
CGCGGTGCAGTTTGGCATCGGCCGTTACCTCTACGACCTGCCCAAGCAGTGGGTGGACTGGAACGATGCCCGGCGCGAAC
CGGTCCACACGCCCGAACTGCCCGAGTGGGCCCGCCCCGACCACGAACGCAGCCCGGGCGGCGCCCACCTCGTGCAGGCG
ATGGAACAGCTGCGGTACGAGTTGCCCGAAGACCTCGACCTGCAACGCGAGGTGTACAAGCACCTCAAGGCCGCGCTGGG
CAGCCTGCAAGGCGGAACGCAAAACCGCCACGGACGGGCGGCATGA

Upstream 100 bases:

>100_bases
AGCCGTCCGACCAGACCCTGGCCCACGCTTTCACTGTTGCCCCGCTTCTCCCTCCTCATTCTGTCTTGACCGTAATTGTG
TTCTGTTATAAACTAAATCC

Downstream 100 bases:

>100_bases
GTCCAGCCACGCCCCGGCAACTCGCTGCGGTGATGCTCGGCGTGCTGACCCTGACGTTGCTGGGCGGGGCACTGGCCAAA
CTGTTCTAGGGCCTGGCAGG

Product: Rad52/22 double-strand break repair protein

Products: NA

Alternate protein names: DNA damage response protein A [H]

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MKLSDVQKRLQAPFPAHLVGWKAQAFNKERTRALLLAYVDARAVQDRLDAICPDSWSFELEVIPGTATPTVKGRLTVLGV
TREDIGEAGEGEYSTLKAAASDALKRCAVQFGIGRYLYDLPKQWVDWNDARREPVHTPELPEWARPDHERSPGGAHLVQA
MEQLRYELPEDLDLQREVYKHLKAALGSLQGGTQNRHGRAA

Sequences:

>Translated_201_residues
MKLSDVQKRLQAPFPAHLVGWKAQAFNKERTRALLLAYVDARAVQDRLDAICPDSWSFELEVIPGTATPTVKGRLTVLGV
TREDIGEAGEGEYSTLKAAASDALKRCAVQFGIGRYLYDLPKQWVDWNDARREPVHTPELPEWARPDHERSPGGAHLVQA
MEQLRYELPEDLDLQREVYKHLKAALGSLQGGTQNRHGRAA
>Mature_201_residues
MKLSDVQKRLQAPFPAHLVGWKAQAFNKERTRALLLAYVDARAVQDRLDAICPDSWSFELEVIPGTATPTVKGRLTVLGV
TREDIGEAGEGEYSTLKAAASDALKRCAVQFGIGRYLYDLPKQWVDWNDARREPVHTPELPEWARPDHERSPGGAHLVQA
MEQLRYELPEDLDLQREVYKHLKAALGSLQGGTQNRHGRAA

Specific function: ssDNA-binding protein that contributes to the ionizing radiation resistance of D.deserti. Plays a role in DNA repair and genome reconstitution, in a RecA-independent process, since DdrA is essential for recovery from severe genomic fragmentation as a resu

COG id: COG4712

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RAD52 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007232 [H]

Pfam domain/function: PF04098 Rad52_Rad22 [H]

EC number: NA

Molecular weight: Translated: 22521; Mature: 22521

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSDVQKRLQAPFPAHLVGWKAQAFNKERTRALLLAYVDARAVQDRLDAICPDSWSFEL
CCHHHHHHHHCCCCCHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
EVIPGTATPTVKGRLTVLGVTREDIGEAGEGEYSTLKAAASDALKRCAVQFGIGRYLYDL
EEECCCCCCCCCCEEEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PKQWVDWNDARREPVHTPELPEWARPDHERSPGGAHLVQAMEQLRYELPEDLDLQREVYK
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
HLKAALGSLQGGTQNRHGRAA
HHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKLSDVQKRLQAPFPAHLVGWKAQAFNKERTRALLLAYVDARAVQDRLDAICPDSWSFEL
CCHHHHHHHHCCCCCHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
EVIPGTATPTVKGRLTVLGVTREDIGEAGEGEYSTLKAAASDALKRCAVQFGIGRYLYDL
EEECCCCCCCCCCEEEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PKQWVDWNDARREPVHTPELPEWARPDHERSPGGAHLVQAMEQLRYELPEDLDLQREVYK
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
HLKAALGSLQGGTQNRHGRAA
HHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA