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The map label for this gene is scoP [H]

Identifier: 94984513

GI number: 94984513

Start: 412093

End: 412782

Strand: Reverse

Name: scoP [H]

Synonym: Dgeo_0405

Alternate gene names: 94984513

Gene position: 412782-412093 (Counterclockwise)

Preceding gene: 94984514

Following gene: 94984512

Centisome position: 16.73

GC content: 66.81

Gene sequence:

>690_bases
ATGAAGTGGCTCACGGCGGCGCTCCTCACCCTCGCGGCGGTCCTGGGGGGACTGCTGCTGTACCGAAACCTTGCGCCGAC
ACCGACCAGCGGCACCGCTCTGGATCACCCGGTGACGCTGCCGGCGCTTAGGCTGGTGGACGACCAGGGACAGATGACCA
CGCTCAACGCTTCGGGGGGCAAGTTGCGGCTGATGTTCTACGGCTACGTGCGCTGCCCCGACGTATGTCCGGCAACGCTG
GCAGCCCTGAAGAACATCTACGCAGGCCTCACGCCACAGCAGCAGGCCCGCGTCCAGATCCAGTTGGTGACGGTGGACCC
GGTCCATGACCGCCCAAGTGTGCTGCGGGATTACCTGAACCGCTTCAACCCAGCCTTTACCGGCCTGACCGGCGACGCCG
CCACCATCGACGAAGCTGCCCGCGTGATGTTTGTGGCGAACGTGCAACCGCAGGTGGCGACCGATCACGTGGCCCACCAG
GACCAGCACAGTCACGAGGCCGGAGCCGCGCACGCCGCGCATGACGACGAGGTGTCCGGTGGAGCCACCGCAGCCGCCCG
GATTCATGGCGACCAGGTGAGCGTGGTGGACCCGCAGGGCCGCTTTGTGCGGGTGTACAGCAACGCGGAAGTCATCGGCG
GCGGACTGGAACATGACCTGCCGGGGCTGATCCGGCAGTACGGAAGCTGA

Upstream 100 bases:

>100_bases
GACGTGCAGAAGCGTTCCCGCCCGCCTCTATGCCGAACGCCCCAGCCCTTATCCCTTCCCCAGGGACACCCTGCCCCCTC
CCCTCCCCTAGGCTGCAGGC

Downstream 100 bases:

>100_bases
GGAGCGTGTTCCCCCCACCGTCCTGCGGTGACCCGTCCCTCCTGGAGGCGAGTGAAGAACCGAGAAGAGGGGCAATGCGG
TCTTGCCGCCGAGAGACAAG

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MKWLTAALLTLAAVLGGLLLYRNLAPTPTSGTALDHPVTLPALRLVDDQGQMTTLNASGGKLRLMFYGYVRCPDVCPATL
AALKNIYAGLTPQQQARVQIQLVTVDPVHDRPSVLRDYLNRFNPAFTGLTGDAATIDEAARVMFVANVQPQVATDHVAHQ
DQHSHEAGAAHAAHDDEVSGGATAAARIHGDQVSVVDPQGRFVRVYSNAEVIGGGLEHDLPGLIRQYGS

Sequences:

>Translated_229_residues
MKWLTAALLTLAAVLGGLLLYRNLAPTPTSGTALDHPVTLPALRLVDDQGQMTTLNASGGKLRLMFYGYVRCPDVCPATL
AALKNIYAGLTPQQQARVQIQLVTVDPVHDRPSVLRDYLNRFNPAFTGLTGDAATIDEAARVMFVANVQPQVATDHVAHQ
DQHSHEAGAAHAAHDDEVSGGATAAARIHGDQVSVVDPQGRFVRVYSNAEVIGGGLEHDLPGLIRQYGS
>Mature_229_residues
MKWLTAALLTLAAVLGGLLLYRNLAPTPTSGTALDHPVTLPALRLVDDQGQMTTLNASGGKLRLMFYGYVRCPDVCPATL
AALKNIYAGLTPQQQARVQIQLVTVDPVHDRPSVLRDYLNRFNPAFTGLTGDAATIDEAARVMFVANVQPQVATDHVAHQ
DQHSHEAGAAHAAHDDEVSGGATAAARIHGDQVSVVDPQGRFVRVYSNAEVIGGGLEHDLPGLIRQYGS

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6319498, Length=119, Percent_Identity=31.9327731092437, Blast_Score=73, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6319511, Length=113, Percent_Identity=33.6283185840708, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 24403; Mature: 24403

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWLTAALLTLAAVLGGLLLYRNLAPTPTSGTALDHPVTLPALRLVDDQGQMTTLNASGG
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCC
KLRLMFYGYVRCPDVCPATLAALKNIYAGLTPQQQARVQIQLVTVDPVHDRPSVLRDYLN
EEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHH
RFNPAFTGLTGDAATIDEAARVMFVANVQPQVATDHVAHQDQHSHEAGAAHAAHDDEVSG
HCCHHHCCCCCCHHHHHHHHEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
GATAAARIHGDQVSVVDPQGRFVRVYSNAEVIGGGLEHDLPGLIRQYGS
CCEEEEEEECCEEEEECCCCCEEEEECCCEEECCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MKWLTAALLTLAAVLGGLLLYRNLAPTPTSGTALDHPVTLPALRLVDDQGQMTTLNASGG
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCC
KLRLMFYGYVRCPDVCPATLAALKNIYAGLTPQQQARVQIQLVTVDPVHDRPSVLRDYLN
EEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHH
RFNPAFTGLTGDAATIDEAARVMFVANVQPQVATDHVAHQDQHSHEAGAAHAAHDDEVSG
HCCHHHCCCCCCHHHHHHHHEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
GATAAARIHGDQVSVVDPQGRFVRVYSNAEVIGGGLEHDLPGLIRQYGS
CCEEEEEEECCEEEEECCCCCEEEEECCCEEECCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226670 [H]